View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12701_low_23 (Length: 271)

Name: NF12701_low_23
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12701_low_23
NF12701_low_23
[»] chr5 (14 HSPs)
chr5 (18-269)||(1249059-1249311)
chr5 (63-170)||(28499818-28499925)
chr5 (73-159)||(5044903-5044990)
chr5 (73-164)||(20269449-20269540)
chr5 (74-127)||(16829210-16829263)
chr5 (68-128)||(32741390-32741451)
chr5 (69-164)||(14751167-14751263)
chr5 (95-170)||(14974902-14974977)
chr5 (69-126)||(28351024-28351082)
chr5 (62-130)||(18200656-18200725)
chr5 (118-167)||(18200700-18200749)
chr5 (69-125)||(40772971-40773028)
chr5 (69-125)||(40773053-40773110)
chr5 (87-167)||(43221582-43221662)
[»] chr4 (14 HSPs)
chr4 (74-170)||(20291789-20291886)
chr4 (97-170)||(51303835-51303908)
chr4 (75-167)||(7277424-7277517)
chr4 (61-110)||(52280963-52281012)
chr4 (74-130)||(45848266-45848322)
chr4 (74-125)||(26470776-26470827)
chr4 (70-164)||(33508574-33508669)
chr4 (98-164)||(22048859-22048925)
chr4 (88-170)||(45848294-45848376)
chr4 (69-163)||(8678986-8679082)
chr4 (69-141)||(10065068-10065141)
chr4 (64-125)||(25129688-25129749)
chr4 (87-167)||(15725513-15725593)
chr4 (74-161)||(23673401-23673489)
[»] chr3 (14 HSPs)
chr3 (67-170)||(55121174-55121278)
chr3 (74-164)||(18093820-18093911)
chr3 (74-164)||(31836453-31836544)
chr3 (71-164)||(28732501-28732595)
chr3 (69-121)||(27786541-27786594)
chr3 (87-135)||(21150163-21150211)
chr3 (87-167)||(36081756-36081836)
chr3 (68-125)||(42514876-42514935)
chr3 (62-128)||(612557-612623)
chr3 (71-164)||(16867660-16867754)
chr3 (69-110)||(26331312-26331354)
chr3 (74-122)||(16867625-16867674)
chr3 (60-125)||(8266424-8266491)
chr3 (76-115)||(26601972-26602012)
[»] scaffold0003 (1 HSPs)
scaffold0003 (73-163)||(320714-320805)
[»] chr6 (6 HSPs)
chr6 (62-167)||(6071875-6071981)
chr6 (69-161)||(674095-674188)
chr6 (61-125)||(3633602-3633669)
chr6 (68-125)||(2271206-2271264)
chr6 (69-127)||(3549596-3549656)
chr6 (61-125)||(9605448-9605512)
[»] chr1 (20 HSPs)
chr1 (69-170)||(24419569-24419671)
chr1 (62-129)||(1609959-1610027)
chr1 (62-160)||(31032488-31032587)
chr1 (56-135)||(29853153-29853233)
chr1 (67-163)||(1226704-1226801)
chr1 (73-164)||(49805141-49805232)
chr1 (69-125)||(50692087-50692145)
chr1 (62-159)||(882921-883019)
chr1 (74-165)||(5700075-5700167)
chr1 (74-165)||(8900801-8900893)
chr1 (69-160)||(47084610-47084702)
chr1 (69-128)||(47154727-47154787)
chr1 (65-124)||(51171338-51171398)
chr1 (72-132)||(8174100-8174162)
chr1 (72-160)||(20814748-20814838)
chr1 (70-130)||(11016665-11016726)
chr1 (74-138)||(30692780-30692845)
chr1 (55-170)||(34890174-34890290)
chr1 (69-164)||(35489199-35489295)
chr1 (73-121)||(46673846-46673894)
[»] chr8 (9 HSPs)
chr8 (62-170)||(27988074-27988183)
chr8 (62-170)||(28045376-28045485)
chr8 (67-164)||(42158383-42158479)
chr8 (76-168)||(38779271-38779362)
chr8 (71-126)||(18147815-18147871)
chr8 (74-126)||(30358661-30358713)
chr8 (78-142)||(24259065-24259130)
chr8 (74-126)||(44803820-44803873)
chr8 (88-164)||(18147853-18147929)
[»] chr7 (19 HSPs)
chr7 (62-165)||(2399695-2399799)
chr7 (69-129)||(29229749-29229809)
chr7 (97-164)||(2635628-2635695)
chr7 (74-164)||(44615190-44615282)
chr7 (74-170)||(17801385-17801486)
chr7 (71-170)||(35985264-35985363)
chr7 (71-170)||(36006672-36006771)
chr7 (78-164)||(39751076-39751162)
chr7 (71-170)||(35985296-35985396)
chr7 (71-170)||(36006704-36006804)
chr7 (69-124)||(3094417-3094473)
chr7 (76-164)||(19509307-19509395)
chr7 (74-133)||(29046332-29046392)
chr7 (72-164)||(3094336-3094433)
chr7 (62-164)||(29229668-29229770)
chr7 (69-129)||(31498493-31498554)
chr7 (69-123)||(45444720-45444776)
chr7 (74-129)||(14574963-14575021)
chr7 (74-125)||(34465133-34465185)
[»] chr2 (8 HSPs)
chr2 (60-167)||(30429062-30429169)
chr2 (62-167)||(472451-472557)
chr2 (89-160)||(25931618-25931689)
chr2 (67-161)||(29168545-29168640)
chr2 (69-126)||(9733546-9733604)
chr2 (69-126)||(27279489-27279547)
chr2 (67-108)||(29168500-29168542)
chr2 (74-125)||(31719188-31719240)
[»] scaffold0777 (1 HSPs)
scaffold0777 (87-167)||(4733-4813)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 1249059 - 1249311
Alignment:
Q  18 tttacatggggtctatttccaaagtgtggtaaccacataaattttactctatccgatcacatttataagaaaaaacaactttttaggttcattaaatagc 117  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1249059 tttacatggggtccatttccaaagtgtcgtaaccacataaattttactctatccgctcacatttataagaaaaaacaactttttaggttcattaaatagc 1249158  T
Q  118 taatgtatctgatttataaatatgacaacatacattagttattcaataaatctnnnnnnnttgttttttgcttataaatataattgaatggagtacctac 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||     
T  1249159 taatgtatctgatttataaatatgacaacatacattagttattcaataaatctaaaaaaattgttttttgcttataaatataattgaatggagtatctaa 1249258  T
Q  218 tnnnnnnntgagtgttggaat-agtgttaaaagagaatattcatctcactcga 269  Q
    |       ||||||||||||| ||||||||||||||||||||||  |||||||    
T  1249259 taagaaaatgagtgttggaatgagtgttaaaagagaatattcatagcactcga 1249311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 28499925 - 28499818
Alignment:
Q  63 actctatccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattca 162  Q
    |||| ||||||||||||||||||||||||| |||||||||| |  ||| ||||  |||||||| | || ||||| ||||||   ||||||||||||||||    
T  28499925 actccatccgatcacatttataagaaaaaataactttttagatatattgaataattaatgtatttaatctataattatgaccggatacattagttattca 28499826  T
Q  163 ataaatct 170  Q
    || |||||    
T  28499825 atgaatct 28499818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 159
Target Start/End: Original strand, 5044903 - 5044990
Alignment:
Q  73 atcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttat 159  Q
    ||||||||||||||||||| | || ||||||||| |||||||||| |||||||||| |  ||||| |||||| | |||||||||||||    
T  5044903 atcacatttataagaaaaatataattttttaggtacattaaatagttaatgtatctaacctataattatgaccaaatacattagttat 5044990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 20269449 - 20269540
Alignment:
Q  73 atcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||| |||||||||||||||||||||||||| |  ||| ||||  | ||||||||||  || ||||||||| | |||||||| |||||||||    
T  20269449 atcatatttataagaaaaaacaactttttagatatattgaataattgatgtatctgacctacaaatatgacgaaatacattaattattcaat 20269540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 16829210 - 16829263
Alignment:
Q  74 tcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatct 127  Q
    ||||||||||||| ||||| ||||||||| ||||||| |||| |||||||||||    
T  16829210 tcacatttataagcaaaaataactttttaagttcattgaatatctaatgtatct 16829263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 32741451 - 32741390
Alignment:
Q  68 atccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctg 128  Q
    ||||||||||||||||||| |||||| || |||||||||||||||||||  || ||||||||    
T  32741451 atccgatcacatttataagcaaaaaataattttttaggttcattaaataattattgtatctg 32741390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 164
Target Start/End: Complemental strand, 14751263 - 14751167
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||| ||||||||||||| ||||||||||||||||||| |||| ||||| | |||||||| |  ||||||| | ||   |||||||| |||||||||    
T  14751263 tccggtcacatttataagcaaaaaacaactttttaggtacattgaatagttgatgtatctaacctataaatgtaactggatacattaattattcaat 14751167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 14974902 - 14974977
Alignment:
Q  95 actttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatct 170  Q
    ||||||||| ||||||||||| ||||| ||| |||| ||||||||||||   |||||||| ||||  |||||||||    
T  14974902 actttttagattcattaaataactaatatatttgatctataaatatgactgaatacattaattatataataaatct 14974977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 28351082 - 28351024
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    |||| ||| ||||||||| ||||||||||||||||| |||||| |||| ||||||||||    
T  28351082 tccggtcatatttataagcaaaaaacaactttttagattcattgaataactaatgtatc 28351024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 18200656 - 18200725
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgat 130  Q
    ||||||||| ||||||||||||||| |||||  || |||||| ||| ||| |||| ||||||||||||||    
T  18200656 tactctatctgatcacatttataagcaaaaattaattttttaagtttattgaataactaatgtatctgat 18200725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 18200749 - 18200700
Alignment:
Q  118 taatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    |||||||| |||||||||| |||||  | |||||||||||||||||||||    
T  18200749 taatgtatttgatttataattatgatcagatacattagttattcaataaa 18200700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 40772971 - 40773028
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    |||| ||||||||||||| ||||||||| |||||||||||||| ||||  ||||||||    
T  40772971 tccggtcacatttataagtaaaaaacaattttttaggttcatttaatacttaatgtat 40773028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 40773110 - 40773053
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    |||| ||||||||||||| ||||||| |||||||||||||||| || | |||||||||    
T  40773110 tccggtcacatttataagcaaaaaaccactttttaggttcattcaacacctaatgtat 40773053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 43221582 - 43221662
Alignment:
Q  87 aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    |||||| |||||||||| |||||||||||   |||||||| | | | ||||| |||| |||||||||| || |||||||||    
T  43221582 aaaaaataactttttagattcattaaataatcaatgtatcgggtctgtaaatgtgaccacatacattaatttttcaataaa 43221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 20291789 - 20291886
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatct 170  Q
    ||||||||||||| |||||||||||||||| ||  |||||||| |||||||||||||| ||||| || |||   ||||||||||||||||||||||||    
T  20291789 tcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatctgatctataattacgactggatacattagttattcaataaatct 20291886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 51303835 - 51303908
Alignment:
Q  97 tttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatct 170  Q
    ||||||||||||||||||| |||| ||||||  ||||||||| |||| | |||||||||||||||||| |||||    
T  51303835 tttttaggttcattaaataactaacgtatctagtttataaatgtgactagatacattagttattcaatgaatct 51303908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 7277424 - 7277517
Alignment:
Q  75 cacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    ||||||||||||  |||||||||||||||||||||||| |||| ||||||||||||| || || ||| ||  | |||||| ||||||||||||||    
T  7277424 cacatttataagcaaaaaaacaactttttaggttcattgaataactaatgtatctgacttttatata-gatcagatacatgagttattcaataaa 7277517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 52281012 - 52280963
Alignment:
Q  61 ttactctatccgatcacatttataagaaaaaacaactttttaggttcatt 110  Q
    |||||| ||||||| ||||||||||| |||||| ||||||||||||||||    
T  52281012 ttactccatccgattacatttataagtaaaaactactttttaggttcatt 52280963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 45848266 - 45848322
Alignment:
Q  74 tcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgat 130  Q
    ||||||| ||||||||||||| |||||||| || ||| |||| ||||||||||||||    
T  45848266 tcacattcataagaaaaaacatctttttagatttattgaataactaatgtatctgat 45848322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 125
Target Start/End: Complemental strand, 26470827 - 26470776
Alignment:
Q  74 tcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||||||||  ||||||||||||||| ||| |||||||| |||||||||    
T  26470827 tcacatttataaataaaaacaactttttaagttaattaaataactaatgtat 26470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 33508669 - 33508574
Alignment:
Q  70 ccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||||||||||| |||| ||||||| |||| |||||| |||| ||||||||| || || ||| || | || | || |||||||||||||||    
T  33508669 ccgatcacatttataagcaaaacacaacttgttagattcattgaataactaatgtatatggttcatacatgtaaccaaatccattagttattcaat 33508574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 22048925 - 22048859
Alignment:
Q  98 ttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||||||| ||||||||||||||||| | ||| ||| |||  | |||||||| |||||||||    
T  22048925 ttttaggttcattgaatagctaatgtatctggtgtattaatgtgatcaaatacattaattattcaat 22048859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 45848376 - 45848294
Alignment:
Q  88 aaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatct 170  Q
    ||||| |||||| ||| ||||||  ||| ||||||||| |||||| |||||  ||  | ||||||||||||||||||||||||    
T  45848376 aaaaataactttatagattcattggataactaatgtatgtgatttgtaaatgcgatcagatacattagttattcaataaatct 45848294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 8679082 - 8678986
Alignment:
Q  69 tccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaa 163  Q
    |||| |||||||||||||  |||||| || ||||||||| |||| |||| ||||||||||| |  ||||||| ||||   |||||||| ||||||||    
T  8679082 tccggtcacatttataagcaaaaaaataattttttaggtacattgaatacctaatgtatctaacatataaatgtgaccggatacattaattattcaa 8678986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 10065068 - 10065141
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatg 141  Q
    |||| ||||||||||||| ||||||||||||||||||| |||  ||||  |||||||||| | | |||||||||    
T  10065068 tccggtcacatttataagcaaaaaacaactttttaggtacatccaataattaatgtatctaactcataaatatg 10065141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 25129688 - 25129749
Alignment:
Q  64 ctctatccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    |||| ||||||||||||||||  |||||||||  |||||| |||||| |||| |||||||||    
T  25129688 ctctctccgatcacatttatataaaaaaacaatattttagtttcattgaatatctaatgtat 25129749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 15725593 - 15725513
Alignment:
Q  87 aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    |||||||||||||||||||  ||| |||| || ||||||||  | ||||| |||||    |||||||||||||||||||||    
T  15725593 aaaaaacaactttttaggtatattgaataactcatgtatctagtctataattatgattggatacattagttattcaataaa 15725513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 23673489 - 23673401
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattc 161  Q
    ||||||||||||| |||||| ||||||||||||  ||| ||||  ||||||||||||  |||| || |||| | |||||||| ||||||    
T  23673489 tcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatctgacatatatatgtgaccaaatacattaattattc 23673401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 55121174 - 55121278
Alignment:
Q  67 tatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaata 165  Q
    |||||| ||||||||||||  ||||||||| |||||||||||||| |||| ||||||||| || ||||||||| |||| | |||||||| ||||| ||||    
T  55121174 tatccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatttggtttataaatgtgaccaaatacattaattatttaata 55121273  T
Q  166 aatct 170  Q
    |||||    
T  55121274 aatct 55121278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 18093911 - 18093820
Alignment:
Q  74 tcacatttataagaaa-aaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||||||| || |||||| |||||||||| ||| ||||  ||||||||||||  ||||||| |||||| |||||||| |||||||||    
T  18093911 tcacatttataagcaataaacaagtttttaggtttattgaataattaatgtatctgacctataaatgtgacaagatacattaattattcaat 18093820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 31836544 - 31836453
Alignment:
Q  74 tcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||||||| |||  ||||||||||||||||||| ||||  |||||||| || | |||||||||||| | |||||||| |||||||||    
T  31836544 tcacatttataagtaaatgacaactttttaggttcattgaataattaatgtatttggtctataaatatgactaaatacattaattattcaat 31836453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 28732595 - 28732501
Alignment:
Q  71 cgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||||||||||||||| |||| | |||||||||| |||||| |||  |||||| ||| | | ||||||| |||| | ||||||||||||||||||    
T  28732595 cgatcacatttataagcaaaatagaactttttagattcattgaatgactaatgaatccggtctataaatgtgactaaatacattagttattcaat 28732501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 27786594 - 27786541
Alignment:
Q  69 tccgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaat 121  Q
    |||||||||||||||||| |||| ||||||||||||||||||| |||| |||||    
T  27786594 tccgatcacatttataagcaaaacacaactttttaggttcattgaatacctaat 27786541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 21150163 - 21150211
Alignment:
Q  87 aaaaaacaactttttaggttcattaaatagctaatgtatctgatttata 135  Q
    |||||| |||||||||| ||||||||||| ||||||||||| |||||||    
T  21150163 aaaaaataactttttagattcattaaataactaatgtatctaatttata 21150211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 36081836 - 36081756
Alignment:
Q  87 aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    ||||||||| |||||||||||||| ||||  | |||||||| || |||||||||||  | ||| |||| ||||||||||||    
T  36081836 aaaaaacaattttttaggttcattgaataattcatgtatcttatctataaatatgatcaaatatattaattattcaataaa 36081756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 42514935 - 42514876
Alignment:
Q  68 atccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||||||||||||||   ||||||||||||||||| || |||||||| |||||||||    
T  42514935 atccgatcacatttataaacaaaaaaacaactttttagatttattaaataactaatgtat 42514876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 612557 - 612623
Alignment:
Q  62 tactctatccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctg 128  Q
    ||||| || |||||||||||||||||||||| ||  |||||| || ||| |||| ||||||||||||    
T  612557 tactccattcgatcacatttataagaaaaaataatattttagatttattgaataactaatgtatctg 612623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 16867754 - 16867660
Alignment:
Q  71 cgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||||||||||||||| ||||||||||||||||||| |||  ||||  | |||||||| |   |||||||||||   || |||||||||||||||    
T  16867754 cgatcacatttataagcaaaaaacaactttttaggtacatccaataattgatgtatctaacccataaatatgaccgaatgcattagttattcaat 16867660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 26331354 - 26331312
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcatt 110  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  26331354 tccggtcacatttataagcaaaaaacaactttttaggttcatt 26331312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 16867625 - 16867674
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatg 122  Q
    ||||||||||||| ||||||||||||||||||| |||| |||| ||||||    
T  16867625 tcacatttataagcaaaaaacaactttttaggtacattgaataactaatg 16867674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 8266424 - 8266491
Alignment:
Q  60 tttactctatccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||| ||||| |||||||||||||  ||||||||| ||||||||| |||| |||| || ||||||    
T  8266424 tttactccatccgttcacatttataagcaaaaaaacaattttttaggtacattgaataacttatgtat 8266491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 26601972 - 26602012
Alignment:
Q  76 acatttataag-aaaaaacaactttttaggttcattaaata 115  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  26601972 acatttataagcaaaaaacaactttttaggttcattgaata 26602012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 320805 - 320714
Alignment:
Q  73 atcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaa 163  Q
    |||||||||||||| |||| |||||||||||| ||||||||||| ||||| |||||| |||||||||| ||  | |||||||||||||||||    
T  320805 atcacatttataagcaaaacacaactttttagattcattaaataactaatatatctggtttataaataggattagatacattagttattcaa 320714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 62 - 167
Target Start/End: Original strand, 6071875 - 6071981
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| || ||||||||| ||||| |||||||  ||||||||||||   |||||||| |||||    
T  6071875 tactcaatccgatcgcatttataaggaaaaaaaaactttttaagtacattaaataactaatatatctgagatataaatatgaccgaatacattaattatt 6071974  T
Q  161 caataaa 167  Q
    |||||||    
T  6071975 caataaa 6071981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 674188 - 674095
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattc 161  Q
    |||| ||||||||||||| ||||||||| ||||||| |||||| |||| ||||| ||| || | |||||||||||  | |||||||| ||||||    
T  674188 tccggtcacatttataagcaaaaaacaattttttagattcattgaataactaatatatttggtctataaatatgagcaaatacattaattattc 674095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Original strand, 3633602 - 3633669
Alignment:
Q  61 ttactctatccgatcacatttataagaaaaaa---caactttttaggttcattaaatagctaatgtat 125  Q
    |||||| |||||||||||||||||| ||||||    |||||||||||||||||  |||||||||||||    
T  3633602 ttactccatccgatcacatttataaaaaaaaaaattaactttttaggttcattgcatagctaatgtat 3633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 125
Target Start/End: Complemental strand, 2271264 - 2271206
Alignment:
Q  68 atccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||||||||||||||| |||||| |||||||||| |||||| || | |||||||||    
T  2271264 atccgatcacatttataagcaaaaaataactttttagattcattgaacaactaatgtat 2271206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 127
Target Start/End: Complemental strand, 3549656 - 3549596
Alignment:
Q  69 tccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatct 127  Q
    ||||||||||||||||||  |||| |||||||||||  | ||||||||||||||| |||||    
T  3549656 tccgatcacatttataagtaaaaacacaactttttaaatacattaaatagctaatatatct 3549596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 9605512 - 9605448
Alignment:
Q  61 ttactctatccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||| |||| |||||||||||||||||||| | |||||| ||||| | || | |||||||||    
T  9605512 ttactctctccggtcacatttataagaaaaaaccaatttttaagttcactcaacacctaatgtat 9605448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 69 - 170
Target Start/End: Complemental strand, 24419671 - 24419569
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    |||| ||||||||||||| ||||||||||||||||||| |||| ||||  |||||||||||| |||||| ||||||   ||||||||||| |||||| ||    
T  24419671 tccggtcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatctgacttataattatgactggatacattagttcttcaatgaa 24419572  T
Q  168 tct 170  Q
    |||    
T  24419571 tct 24419569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 1609959 - 1610027
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctga 129  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||  ||||||||||||    
T  1609959 tactctatccgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatctga 1610027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 31032587 - 31032488
Alignment:
Q  62 tactctatccgatcacatttataagaaaaaa-caactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||| ||||| ||||||||||||| ||||  ||| ||||||||||||||||||| ||||||||| || | ||||||| |||| | |||||||| |||||    
T  31032587 tactccatccggtcacatttataagcaaaactcaattttttaggttcattaaataactaatgtatttggtctataaatgtgactagatacattaattatt 31032488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 135
Target Start/End: Original strand, 29853153 - 29853233
Alignment:
Q  56 aaattttactctatccgatcacatttataagaaaaaac-aactttttaggttcattaaatagctaatgtatctgatttata 135  Q
    |||||||||||  |||||||||||||||||| ||||   ||| ||||||||||||| |||| ||||||||||||| |||||    
T  29853153 aaattttactccctccgatcacatttataagcaaaatgtaacattttaggttcattcaataactaatgtatctgacttata 29853233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 1226801 - 1226704
Alignment:
Q  67 tatccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaa 163  Q
    ||||| ||||||||||||||  |||||| || |||||| ||||||| |||| ||||||||| || | |||||||||||| | |||||||| ||||||||    
T  1226801 tatcctatcacatttataagcaaaaaaataattttttaagttcattgaataactaatgtatttg-tctataaatatgaccaaatacattatttattcaa 1226704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 49805141 - 49805232
Alignment:
Q  73 atcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||||||||||||| |||||  | |||||||||| |||||||| ||||| |||||  | ||||||| | | || ||||||||||||||||||    
T  49805141 atcacatttataagtaaaaaataatttttaggttgattaaatacctaatatatctagtctataaatgtaataagatacattagttattcaat 49805232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Original strand, 50692087 - 50692145
Alignment:
Q  69 tccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    |||| |||||||||||||  ||||||| ||||||||||||||||||||| |||||||||    
T  50692087 tccggtcacatttataagcaaaaaaactactttttaggttcattaaatacctaatgtat 50692145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 882921 - 883019
Alignment:
Q  62 tactctatccgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttat 159  Q
    |||||||| || ||||||||||||| |||| | ||||||||||||||||| |||| ||||||||| | || ||||||| |||  | |||||||| ||||    
T  882921 tactctattcggtcacatttataagtaaaatataactttttaggttcattgaataactaatgtatttaatatataaatgtgatcaaatacattaattat 883019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 5700167 - 5700075
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaata 165  Q
    ||||||||||||| |||||||||||||||| || |||| ||||  ||||| || |||| |||||||||||    |||||||| ||||||||||    
T  5700167 tcacatttataagcaaaaaacaactttttaagtacattgaataattaatgcatttgatctataaatatgatcggatacattaattattcaata 5700075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 8900801 - 8900893
Alignment:
Q  74 tcacatttataagaaa-aaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaata 165  Q
    ||||||||||||| || |||||||||||||||| |||| ||||  |||||||||| |  ||||||| ||||   |||||||| ||||||||||    
T  8900801 tcacatttataagtaataaacaactttttaggtacattgaataattaatgtatctaacctataaatgtgaccggatacattaattattcaata 8900893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 47084702 - 47084610
Alignment:
Q  69 tccgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    |||||| ||||||||||  |||| | || |||||||||||||  |||| ||||||||| |||| |||||||||||| | |||||||| |||||    
T  47084702 tccgattacatttataaacaaaacataattttttaggttcatagaataactaatgtatttgatctataaatatgaccaaatacattaattatt 47084610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 47154787 - 47154727
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctg 128  Q
    |||| ||||||| ||||| |||||||||||||||||||||||| ||||  |||||||||||    
T  47154787 tccggtcacattaataagcaaaaaacaactttttaggttcatttaataaataatgtatctg 47154727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 51171398 - 51171338
Alignment:
Q  65 tctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgta 124  Q
    |||||||  ||||||||||||| |||||| ||||||||| |||||||||||| ||||||||    
T  51171398 tctatccagtcacatttataagtaaaaaataactttttaagttcattaaataactaatgta 51171338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 8174100 - 8174162
Alignment:
Q  72 gatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatctgattt 132  Q
    |||||||||||||||  ||||||||| |||||||||||||| |||| ||| |||||| |||||    
T  8174100 gatcacatttataagcaaaaaaacaattttttaggttcattgaatatctattgtatccgattt 8174162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 20814748 - 20814838
Alignment:
Q  72 gatcacatttataagaaaa--aacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||| |||||||||||||  ||||||||||  ||| |||| |||| | |||||||||||  ||||||| |||||| |||||||| |||||    
T  20814748 gatcatatttataagaaaaaaaacaacttttgtggtacattgaataaccaatgtatctgacatataaatgtgacaagatacattaattatt 20814838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 11016726 - 11016665
Alignment:
Q  70 ccgatcacatttataagaaaaaa-caactttttaggttcattaaatagctaatgtatctgat 130  Q
    ||||||||||||||||  ||||| |||||||||||||| ||| |||| ||||||||| ||||    
T  11016726 ccgatcacatttataaacaaaaatcaactttttaggtttattgaataactaatgtatatgat 11016665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 30692780 - 30692845
Alignment:
Q  74 tcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaat 138  Q
    |||||||||||||||||| |||||||||||||||  || |||| ||||||||| || | |||||||    
T  30692780 tcacatttataagaaaaacacaactttttaggtttgttgaatatctaatgtatttggtctataaat 30692845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 34890174 - 34890290
Alignment:
Q  55 taaattttactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacatt 153  Q
    |||| ||| ||| ||||| |||||| |||||| ||||||||||||||||| | |||| |||| ||||| ||||| |  ||||||| | ||   |||||||    
T  34890174 taaaattttctccatccggtcacatatataagcaaaaaacaactttttagatacattgaataactaatatatctaacatataaatgtaaccggatacatt 34890273  T
Q  154 agttattcaataaatct 170  Q
    | ||||||||| |||||    
T  34890274 aattattcaatgaatct 34890290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 35489199 - 35489295
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||| ||||||||||||  ||||||||||||||||| | |||| ||||  |||||||||| |  ||||||||| || | || ||||| |||||||||    
T  35489199 tccggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtatctaacctataaatatcaccagattcattaattattcaat 35489295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 46673846 - 46673894
Alignment:
Q  73 atcacatttataagaaaaaacaactttttaggttcattaaatagctaat 121  Q
    |||| |||||||||||||||| ||||||||| |||||| |||| |||||    
T  46673846 atcaaatttataagaaaaaactactttttagattcattgaatatctaat 46673894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 27988074 - 27988183
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||||||| | ||||||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  ||||||||| | || | |||||||| |||||    
T  27988074 tactctatctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattatt 27988173  T
Q  161 caataaatct 170  Q
    |||| |||||    
T  27988174 caatgaatct 27988183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 28045376 - 28045485
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||||||| | ||||||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  ||||||||| | || | |||||||| |||||    
T  28045376 tactctatctggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatctcgtttataaatttaactaaatacattaattatt 28045475  T
Q  161 caataaatct 170  Q
    |||| |||||    
T  28045476 caatgaatct 28045485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 164
Target Start/End: Original strand, 42158383 - 42158479
Alignment:
Q  67 tatccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||||| |||||||||||||||||||||||||||||||| |||  ||||  |||||||||| | | |||||| ||||   |||||||| |||||||||    
T  42158383 tatccggtcacatttataagaaaaaacaactttttaggtacatccaata-ataatgtatctaactcataaatgtgactggatacattaattattcaat 42158479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 38779362 - 38779271
Alignment:
Q  76 acatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaat 168  Q
    |||||||||||||||||||| |||||| ||| ||||||||  ||||||||||  |||||| ||| ||  | |||||||| |||||||||||||    
T  38779362 acatttataagaaaaaacaattttttaagtttattaaataattaatgtatctagtttatatata-gaatatatacattatttattcaataaat 38779271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 18147815 - 18147871
Alignment:
Q  71 cgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    |||||||||||||| | |||||| ||||||||||||||||| |||| ||||||||||    
T  18147815 cgatcacatttatatgcaaaaaaaaactttttaggttcattgaataactaatgtatc 18147871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 30358713 - 30358661
Alignment:
Q  74 tcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    ||||||||||||||||||||||||||||||||  ||| ||||  |||||||||    
T  30358713 tcacatttataagaaaaaacaactttttaggtatattgaataaataatgtatc 30358661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 24259065 - 24259130
Alignment:
Q  78 atttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatga 142  Q
    ||||||||| |||| |||| ||||||| |||||| |||| ||||||||||||||| | ||||||||    
T  24259065 atttataaggaaaatacaattttttagattcattcaataactaatgtatctgattcaaaaatatga 24259130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 44803820 - 44803873
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    ||||||||| ||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  44803820 tcacatttacaagtaaaaaacaaatttttagattcattaaatatctaatgtatc 44803873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 18147929 - 18147853
Alignment:
Q  88 aaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||| |||||||||||||  ||| |||| || ||||||||||  ||||| ||||||   ||||||||||||||||||    
T  18147929 aaaatcaactttttaggtatattgaataactcatgtatctgacctataattatgactggatacattagttattcaat 18147853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 2399695 - 2399799
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||||||||| ||||||||||||| ||||||||||||| || || |||| ||||| |||||||||| | |||||||| ||||   |||||||| |||||    
T  2399695 tactctatccggtcacatttataagcaaaaaacaactttctaagtacattgaatagttaatgtatctaacttataaatgtgaccggatacattaattatt 2399794  T
Q  161 caata 165  Q
    |||||    
T  2399795 caata 2399799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 29229809 - 29229749
Alignment:
Q  69 tccgatcacatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctga 129  Q
    |||| ||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||||    
T  29229809 tccggtcatatttataagcaaaaacaactttttaggttcattgaataactaatgtatctga 29229749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 2635628 - 2635695
Alignment:
Q  97 tttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||| ||||||||| |||||||||  ||  |||||||||||| ||||||||||||||||||||    
T  2635628 tttttaggtacattaaataactaatgtattcgacatataaatatgaccacatacattagttattcaat 2635695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 44615190 - 44615282
Alignment:
Q  74 tcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    |||||||||||||  ||||||||  |||||| ||||| | ||||  |||||||||||  |||||||| |||| ||||||||||||||||||||    
T  44615190 tcacatttataagcaaaaaaacatttttttaagttcactgaataattaatgtatctggattataaatgtgactacatacattagttattcaat 44615282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 17801385 - 17801486
Alignment:
Q  74 tcacatttataag-aaaaaacaacttttta----ggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaat 168  Q
    |||||| |||||| ||||||||||||||||    |||||||| |||| ||||||||||| |||||||||| | || | |||||||| ||||||||| |||    
T  17801385 tcacatctataagcaaaaaacaactttttaattaggttcatttaataactaatgtatctaatttataaatgttactagatacattaattattcaatgaat 17801484  T
Q  169 ct 170  Q
    ||    
T  17801485 ct 17801486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 35985264 - 35985363
Alignment:
Q  71 cgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatc 169  Q
    |||||||||||||||| |||| |||||||||||| || ||| |||| ||||||||| |||  |||| ||| | ||| |||||||||||||||||| ||||    
T  35985264 cgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctatatataagtcaa-atacattagttattcaattaatc 35985362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 36006672 - 36006771
Alignment:
Q  71 cgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaatc 169  Q
    |||||||||||||||| |||| |||||||||||| || ||| |||| ||||||||| |||  |||| ||| | ||| |||||||||||||||||| ||||    
T  36006672 cgatcacatttataagcaaaatacaactttttagattaattgaataactaatgtatatgacctatatataagtcaa-atacattagttattcaattaatc 36006770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 39751076 - 39751162
Alignment:
Q  78 atttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||| || | |||| || ||  || ||||||||||||||||||    
T  39751076 atttataagtaaaaaacaactttttagattcattaaatatctaatgtatatggtctatatat-tggtaaaatacattagttattcaat 39751162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 35985396 - 35985296
Alignment:
Q  71 cgatcacatttataagaaaa--aacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaat 168  Q
    |||| |||||||||||||||  ||||||||||||| || ||| |||| ||||||||| ||| ||||| ||| | | | |||||||||||||||||| |||    
T  35985396 cgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatataggtc-atatacattagttattcaattaat 35985298  T
Q  169 ct 170  Q
    ||    
T  35985297 ct 35985296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 36006804 - 36006704
Alignment:
Q  71 cgatcacatttataagaaaa--aacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaat 168  Q
    |||| |||||||||||||||  ||||||||||||| || ||| |||| ||||||||| ||| ||||| ||| | | | |||||||||||||||||| |||    
T  36006804 cgattacatttataagaaaagaaacaactttttagattaattgaataactaatgtatttgacttatatataggtc-atatacattagttattcaattaat 36006706  T
Q  169 ct 170  Q
    ||    
T  36006705 ct 36006704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 3094473 - 3094417
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgta 124  Q
    |||||||||||||||||| |||||| ||||||| ||||||||| |||| ||||||||    
T  3094473 tccgatcacatttataagtaaaaaataacttttaaggttcattgaataactaatgta 3094417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 19509395 - 19509307
Alignment:
Q  76 acatttataagaaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaat 164  Q
    ||||||||||| ||||| |||||||||||| |||| |||| ||||| ||| |||  ||||||| |||| | |||||||  |||||||||    
T  19509395 acatttataagcaaaaaaaactttttaggtacattgaataactaatatatatgacatataaatgtgaccagatacattgattattcaat 19509307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 29046392 - 29046332
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgattta 133  Q
    ||||||||||||| ||||||||| ||||||  ||||||||||| ||||||||| |||||||    
T  29046392 tcacatttataagcaaaaaacaattttttaaattcattaaatatctaatgtatttgattta 29046332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 164
Target Start/End: Original strand, 3094336 - 3094433
Alignment:
Q  72 gatcacatttataag--aaaaaacaactttttaggttcattaaatagcta--atgtatctgatttataaatat-gacaacatacattagttattcaat 164  Q
    ||||| |||||||||  |||||||||||||||||||||| | |||| |||  |||||||||| ||||| |||| ||| |  |||||||||||||||||    
T  3094336 gatcatatttataagcaaaaaaacaactttttaggttcactgaataactaatatgtatctgacttatatatatagaccaggtacattagttattcaat 3094433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 29229668 - 29229770
Alignment:
Q  62 tactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||| ||||| |||||| |||||| ||||||||||||||||| ||||||||| | |||||| || || | |||| ||| | | | ||||||||||||||    
T  29229668 tactccatccggtcacatatataagcaaaaaacaactttttagattcattaaacaactaatgcatttggtctatatataggtc-agatacattagttatt 29229766  T
Q  161 caat 164  Q
    ||||    
T  29229767 caat 29229770  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 129
Target Start/End: Original strand, 31498493 - 31498554
Alignment:
Q  69 tccgatcacatttataagaaaaaa-caactttttaggttcattaaatagctaatgtatctga 129  Q
    |||||||| ||||||||| ||||| ||| ||||||| || |||||||| |||||||||||||    
T  31498493 tccgatcatatttataagtaaaaatcaaatttttagatttattaaataactaatgtatctga 31498554  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 45444720 - 45444776
Alignment:
Q  69 tccgatcacatttataag--aaaaaacaactttttaggttcattaaatagctaatgt 123  Q
    ||||||||||||||||||  |||||||||||||||| ||| ||| |||| |||||||    
T  45444720 tccgatcacatttataagcaaaaaaacaactttttaagtttattgaataactaatgt 45444776  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 14574963 - 14575021
Alignment:
Q  74 tcacatttataag---aaaaaacaactttttaggttcattaaatagctaatgtatctga 129  Q
    |||||||||||||   ||||||||| ||||||||| |||||||||  ||||||||||||    
T  14574963 tcacatttataagcaaaaaaaacaaatttttaggtacattaaataattaatgtatctga 14575021  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 34465133 - 34465185
Alignment:
Q  74 tcacatttataagaaaaaa-caactttttaggttcattaaatagctaatgtat 125  Q
    ||||||||||||  ||||| ||||||||||||||||||| ||| |||||||||    
T  34465133 tcacatttataaacaaaaatcaactttttaggttcattatataactaatgtat 34465185  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 30429062 - 30429169
Alignment:
Q  60 tttactctatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagtta 158  Q
    |||||||  |||| ||||||||||||| |||||||||||||||||||||||| ||||  ||||||||||||  | || ||| ||| | ||||||||||||    
T  30429062 tttactccctccggtcacatttataagcaaaaaacaactttttaggttcattcaataattaatgtatctgacctttatata-gactagatacattagtta 30429160  T
Q  159 ttcaataaa 167  Q
    |||||||||    
T  30429161 ttcaataaa 30429169  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 472557 - 472451
Alignment:
Q  62 tactctatccgatcacatttataagaaaaa-acaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    ||||| ||||| ||||| ||||||| |||| |||| |||||||||| ||| |||| ||||| ||| || | |||||||||||| | ||||||||||||||    
T  472557 tactccatccggtcacaattataagcaaaacacaattttttaggttaattgaataactaatatatttggtctataaatatgaccaaatacattagttatt 472458  T
Q  161 caataaa 167  Q
    |||||||    
T  472457 caataaa 472451  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 160
Target Start/End: Complemental strand, 25931689 - 25931618
Alignment:
Q  89 aaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttatt 160  Q
    |||||||||||||||||||||| |||| | ||||||| |||| ||||||| |||| | |||||||| |||||    
T  25931689 aaaacaactttttaggttcattgaataaccaatgtatttgatctataaatgtgaccaaatacattaattatt 25931618  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 29168640 - 29168545
Alignment:
Q  67 tatccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattc 161  Q
    |||||| ||||||||||||| |||||| |||||||||  | |||||||||  |||||||||| | |||||||| |||| | ||  |||||||||||    
T  29168640 tatccggtcacatttataagcaaaaaataactttttaaatacattaaataattaatgtatcttacttataaatgtgaccagatgtattagttattc 29168545  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 9733604 - 9733546
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    |||| ||||||||||||  ||||||||| |||||||||||||| |||| ||||||||||    
T  9733604 tccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatc 9733546  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Original strand, 27279489 - 27279547
Alignment:
Q  69 tccgatcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtatc 126  Q
    |||| ||||||||||||| |||||| || |||||||||||||| |||| ||||||||||    
T  27279489 tccggtcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatc 27279547  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 29168500 - 29168542
Alignment:
Q  67 tatccgatcacatttataag-aaaaaacaactttttaggttca 108  Q
    |||||||||||| ||||||| ||||||||||||||||||||||    
T  29168500 tatccgatcacagttataagtaaaaaacaactttttaggttca 29168542  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 31719188 - 31719240
Alignment:
Q  74 tcacatttataag-aaaaaacaactttttaggttcattaaatagctaatgtat 125  Q
    ||||||||||||| ||||||||||||||||| |||||| |||| | |||||||    
T  31719188 tcacatttataagtaaaaaacaactttttagattcattgaataacaaatgtat 31719240  T

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Target: scaffold0777 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 4733 - 4813
Alignment:
Q  87 aaaaaacaactttttaggttcattaaatagctaatgtatctgatttataaatatgacaacatacattagttattcaataaa 167  Q
    |||| |||||||||||  |||||| |||| ||||||||| |||| ||||||| |||| | |||||||| |||||| |||||    
T  4733 aaaacacaactttttaaattcattgaataactaatgtatttgatatataaatgtgactagatacattaattattccataaa 4813  T

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