View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_27 (Length: 254)
Name: NF12701_low_27
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_27 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 15821307 - 15821055
Alignment:
| Q |
1 |
tcacttctatctctgcagttgatgccttaattactagtgcatctgatggtgattctctacagctgaaaagattcaacaaattgtacttgctgctctttca |
100 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15821307 |
tcactactatctctgcagttgataccttaattactagtgcatctgatggtgattctctacagctgaaaagattcaacaaattgtacttgctgctctttca |
15821208 |
T |
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| Q |
101 |
aacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15821207 |
aacattggaattcatggtaagtctcctaatgtttctcgtccatggtttcttgattcgagtgcatccaatcacatgacgggttcctctgaatacttgcaca |
15821108 |
T |
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| Q |
201 |
atttacattcttacgatggtaatcagaaaattcaaattgctgatggtaataccc |
254 |
Q |
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| T |
15821107 |
a-ttacattcttattatggtaatcagaaaattcaaattgttgctggtaataccc |
15821055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 26626414 - 26626191
Alignment:
| Q |
29 |
aattactagtgcatctgatggtgattctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcct |
127 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||| || |
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| T |
26626414 |
aattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcaaatatgggaattcatggtaagtcttct |
26626315 |
T |
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| Q |
128 |
aatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcaga |
227 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26626314 |
aatgtttctcgtccatggtttcttgattctggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaac |
26626215 |
T |
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| Q |
228 |
aaattcaaattgctgatggtaata |
251 |
Q |
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|||||||||||||||||||||||| |
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| T |
26626214 |
aaattcaaattgctgatggtaata |
26626191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 49117706 - 49117929
Alignment:
| Q |
29 |
aattactagtgcatctgatggtgattctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcct |
127 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||| || |
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| T |
49117706 |
aattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcaaatatgggaattcatggtaagtcttct |
49117805 |
T |
|
| Q |
128 |
aatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcaga |
227 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49117806 |
aatgtttctcgtccatggtttcttgattctggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaac |
49117905 |
T |
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| Q |
228 |
aaattcaaattgctgatggtaata |
251 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49117906 |
aaattcaaattgctgatggtaata |
49117929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 26635801 - 26635602
Alignment:
| Q |
53 |
ttctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttctt |
151 |
Q |
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||||||||||| ||||| |||||||||||| |||||||||||||| ||| | || |||||||||| ||||||| |||||||||||| ||||||||||||| |
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| T |
26635801 |
ttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcatatatgggaattcatgttaagtcttctaatgtttctcgtccatggtttctt |
26635702 |
T |
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| Q |
152 |
gattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaata |
251 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
26635701 |
gattctggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaacaaattcaaattgctgatggtaata |
26635602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 29 - 254
Target Start/End: Complemental strand, 4866311 - 4866085
Alignment:
| Q |
29 |
aattactagtgcatctgatggtgattctctacag-ctgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcct |
127 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
4866311 |
aattactagtgcatctgatggtggttctctacagtctgaaatgattcaacaaatggtaattgctgctctttcaaggatgggaattcatggtaagtctcct |
4866212 |
T |
|
| Q |
128 |
aatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcaga |
227 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4866211 |
aatgtttctcgtccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcaga |
4866112 |
T |
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| Q |
228 |
aaattcaaattgctgatggtaataccc |
254 |
Q |
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||||||||||||||||||||||||||| |
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| T |
4866111 |
aaattcaaattgctgatggtaataccc |
4866085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 29 - 251
Target Start/End: Complemental strand, 35937259 - 35937036
Alignment:
| Q |
29 |
aattactagtgcatctgatggtgattctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcct |
127 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||||| || |||||||||||||||||| || |
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| T |
35937259 |
aattactagtgcatctgatggtggttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcaaatatgggaattcatggtaagtcttct |
35937160 |
T |
|
| Q |
128 |
aatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcaga |
227 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35937159 |
aatgtttctcgtccatggtttcttgattctggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttatcatggtaatcaac |
35937060 |
T |
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| Q |
228 |
aaattcaaattgctgatggtaata |
251 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
35937059 |
aaattcaaattgctgatggtaata |
35937036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 21691650 - 21691875
Alignment:
| Q |
29 |
aattactagtgc--atctgatggtgattctctacagc-tgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctc |
125 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||| |||||||||||||| ||| | || |||||||||| ||||||| |
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| T |
21691650 |
aattactagtgcgcatctgatggtgcttctctacagcctgaaatgattcaacaaatggtacttgctgctctatcatatatgggaattcatgttaagtctt |
21691749 |
T |
|
| Q |
126 |
ctaatgtttctcttccatggtttcttgattccggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatca |
225 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
21691750 |
ctaatgtttctcgtccatggtttcttgattctggtgcatccaatcacatgacgggttcctctgaatacttgcacaatttagcttcttatcatggtaatca |
21691849 |
T |
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| Q |
226 |
gaaaattcaaattgctgatggtaata |
251 |
Q |
| |
|
||||||||||||||||||| |||| |
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| T |
21691850 |
acaaattcaaattgctgatggaaata |
21691875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 63 - 252
Target Start/End: Complemental strand, 17605946 - 17605757
Alignment:
| Q |
63 |
ctgaaaagattcaacaaattgtacttgctgctctttcaaacattggaattcatggtaagtctcctaatgtttctcttccatggtttcttgattccggtgc |
162 |
Q |
| |
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|||||| |||||||||||| ||| || |||||||| || ||||||||||| ||||||||| | |||| ||||| ||||||||||||||||| || || |
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| T |
17605946 |
ctgaaatgattcaacaaatggtaatttctgctcttccatcaattggaattcagggtaagtcttcaaatgcttctcacccatggtttcttgattctggcgc |
17605847 |
T |
|
| Q |
163 |
atccaatcacatgacgggttcctctgaatacttgcacaatttacattcttacgatggtaatcagaaaattcaaattgctgatggtaatac |
252 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| |
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| T |
17605846 |
atcctatcacatgacgggttccttagaatacttgcacaatttacattcttatgatggtaataagaaaattcaaattgccgatggtaatac |
17605757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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