View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_31 (Length: 207)
Name: NF12701_low_31
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_31 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 42254121 - 42254289
Alignment:
| Q |
19 |
acccatttcttcaatttcaccggaaacttgttccggtgctggtgcggttgttgtttcttctccgccgttgttgggttcttctgttcaccgacgtaagaga |
118 |
Q |
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| T |
42254121 |
acccatttcttcaatttcaccggaaacttgttccggtgctggtgcggttgttgtttcttctccgccgttgttgggttcttctgttcaccgacgtaagaga |
42254220 |
T |
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| Q |
119 |
aattcaccaccagcaccaacactacctccgcagcagcagcagttgttgcagtatggtgtggatccgatg |
187 |
Q |
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| T |
42254221 |
aattcaccaccagcaccaacactacctccgcagcagcagcagttgttgcagtatggtgtggatccgatg |
42254289 |
T |
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Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 261802 - 261761
Alignment:
| Q |
58 |
tggtgcggttgttgtttcttctccgccgttgttgggttcttc |
99 |
Q |
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| T |
261802 |
tggtgcggtttttgtttcttctccgccgttgctgggtgcttc |
261761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 58 - 99
Target Start/End: Complemental strand, 2828914 - 2828873
Alignment:
| Q |
58 |
tggtgcggttgttgtttcttctccgccgttgttgggttcttc |
99 |
Q |
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| T |
2828914 |
tggtgcggtttttgtttcttctccgccgttgatgggtgcttc |
2828873 |
T |
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