View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_4 (Length: 503)
Name: NF12701_low_4
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 415
Target Start/End: Original strand, 37001718 - 37002113
Alignment:
| Q |
20 |
ccacccacgttccctttcttcaccaacgttaatcctaacatcattgcagttcttgattgtaagtctttctcccatctctttgatatggaccttgttgaca |
119 |
Q |
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| T |
37001718 |
ccacccacgttccctttcttcaccaacgttaatcctaacatcattgcagttcttgattgtaagtctttctcccatctctttgatatggaccttgttgaca |
37001817 |
T |
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| Q |
120 |
aaaaagatgttttggttggagattttgttcctagtgttgaatttacgggaaatattagggttggtgtttatcaagatgtttctgaacctcaacatgctaa |
219 |
Q |
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| T |
37001818 |
aaaaagatgttttggttggagattttgttcctagtgttgaatttacgggaaatatcagggttggtgtttatcaagatgtttctgaacctcaacatgctaa |
37001917 |
T |
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| Q |
220 |
ggtaccactatgacactacctactttcttagatttcttctgatcatgaaatttcattttgtcaattttgtttcttaattatcaagtttctaactcagagg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |
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| T |
37001918 |
ggtaccactatgacactacctactttcttagatttcttctgatcatgaaatttcattttgtcaattttgtttcttaattatgaactttctaactcagcgg |
37002017 |
T |
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| Q |
320 |
tgtcataatttgataacaataaactattctactacatgaatttataagacgatgttgctctaatccatcaatttatcgaaactgcaaaaatttccc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37002018 |
tgtcataatttgataacaataaactattctactacatgaatgtataagacgatgttgctctaatccatcaatttatcgaaactgcaaaaatttccc |
37002113 |
T |
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