View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12701_low_6 (Length: 438)
Name: NF12701_low_6
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 420
Target Start/End: Original strand, 6736631 - 6737037
Alignment:
| Q |
15 |
cacagattacttgatgaaattaggatctgctccaatatcatggaaaacgaagaagcaaatcaccgtgtcaaagccatcaagtgaggcagagtatcgagcc |
114 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6736631 |
cacaggttacttgatgaaattaggatctgccccaatatcatggaagacgaagaagcaaatcaccgtgtcaaagtcatcaagtgaggcagagtatcgagcc |
6736730 |
T |
|
| Q |
115 |
atgaaccaa-ctgttagtgaggtcatttggttgcgcagtctattgtccagtttacaaattcagtatgattgtcctactgttctgcattgtgataatcaag |
213 |
Q |
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||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6736731 |
atgaaccaagctgttagcgagatcatttggttgcgcagtctattgtccagtttacaaattcagtatgattgtcctactgttctgcattgtgataatcaag |
6736830 |
T |
|
| Q |
214 |
ctgcaatccacattgcagcaaacccaggattccacgaaaggacaaaacacattgaaaccgattgccatttcattcgtactcatctgcagagaggcgtaat |
313 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6736831 |
ctgcaatccacattgcagcaaacccagtattccacgaaaggacaaaacacattgaaaccgattgccatttcattcgtactcatctgcagagaggcgtaat |
6736930 |
T |
|
| Q |
314 |
ttccaccacctatatccatactaaaaaataacaggttgatatattcacgaaggcattagcatccaagcagtttcaagatcttactgtcaagttgggtgtc |
413 |
Q |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
6736931 |
ttccaccacctatatccatactaaaaagcaacaggctgatatattcacgaaggcattagcatccaagcagtttcaagatcttactgccaagttgggtctt |
6737030 |
T |
|
| Q |
414 |
cataacc |
420 |
Q |
| |
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||||||| |
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| T |
6737031 |
cataacc |
6737037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 49 - 290
Target Start/End: Original strand, 9588143 - 9588385
Alignment:
| Q |
49 |
atatcatggaaaacgaagaagcaaatcaccgtgtcaaagccatcaagtgaggcagagtatcgagccatgaaccaa-ctgttagtgaggtcatttggttgc |
147 |
Q |
| |
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|||||||||||||| |||||||| | ||| || || ||| |||||||||||||||| ||||| |||||||||||| |||| ||||| || || ||| | | |
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| T |
9588143 |
atatcatggaaaaccaagaagcagaccacggtttctaagtcatcaagtgaggcagaatatcgggccatgaaccaagctgtgagtgaagttatatggcttc |
9588242 |
T |
|
| Q |
148 |
gcagtctattgtccagtttacaaattcagtatgattgtcctactgttctgcattgtgataatcaagctgcaatccacattgcagcaaacccaggattcca |
247 |
Q |
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||||||||||||| ||| ||||| ||||| || || |||||||| || |||||||| || || || ||||||||||||| ||||| |||| | || |
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| T |
9588243 |
gcagtctattgtcaagtctacaagttcagaatacttcccctactgtgcttcattgtgacaaccaggcaacaatccacattgccgcaaatccagtctatca |
9588342 |
T |
|
| Q |
248 |
cgaaaggacaaaacacattgaaaccgattgccatttcattcgt |
290 |
Q |
| |
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||| || || ||||| || ||| |||||||||||||||||| |
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| T |
9588343 |
cgagagaactaaacatatcgaagtggattgccatttcattcgt |
9588385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 420
Target Start/End: Complemental strand, 52088296 - 52088245
Alignment:
| Q |
369 |
ttagcatccaagcagtttcaagatcttactgtcaagttgggtgtccataacc |
420 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||| | ||||||| |
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|
| T |
52088296 |
ttagcatccaagcagtttcaagatcttactgccaagttgggtcttcataacc |
52088245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 175
Target Start/End: Complemental strand, 33720680 - 33720532
Alignment:
| Q |
28 |
atgaaattaggatctgctccaatatcatggaaaacgaagaagcaaatcaccgtgtcaaagccatcaagtgaggcagagtatcgagccatgaaccaa-ctg |
126 |
Q |
| |
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||||| |||||||| ||||| |||||||||||||| || || || ||| ||||||||| |||||||||| ||||| ||| |||||||| ||| ||| |
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| T |
33720680 |
atgaagttaggatcagctcctatatcatggaaaactaaaaaacagtccacagtgtcaaagtcatcaagtgaagcagaatatagagccatggggcaagctg |
33720581 |
T |
|
| Q |
127 |
ttagtgaggtcatttggttgcgcagtctattgtccagtttacaaattca |
175 |
Q |
| |
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| || || ||||||||||| | || ||||| |||||||||||| |||| |
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|
| T |
33720580 |
tcagcgaagtcatttggttaagaagcctattatccagtttacaagttca |
33720532 |
T |
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