View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12701_low_8 (Length: 415)
Name: NF12701_low_8
Description: NF12701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12701_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 44225849 - 44225452
Alignment:
| Q |
7 |
cttgcatgggctctatcatgtcttgcatgctataataaagttatgtttcatgttgtatgttgaannnnnnnacaagccaacggtattaagttgtatattg |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
44225849 |
cttgcatgggctttatcatgtcttgcatgccataataaagttatgtttcatgttgtatgttgaatttttt-acaagccaacggtattaagttttatattg |
44225751 |
T |
|
| Q |
107 |
tataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225750 |
tataattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaact |
44225651 |
T |
|
| Q |
207 |
acaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44225650 |
acaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctga |
44225551 |
T |
|
| Q |
307 |
gacaatatgttcacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattatcttaatctctg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44225550 |
gacaatatgttcacattatgaatggcactgcagttatatcactgctccaaccagcacctgagacttatgatctttttgatgacattatcttaatttctg |
44225452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 405
Target Start/End: Complemental strand, 44236663 - 44236266
Alignment:
| Q |
7 |
cttgcatgggctctatcatgtcttgcatgctataataaagttatgtttcatgttgtatgttgaannnnnnnacaagccaacggtattaagttgtatattg |
106 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44236663 |
cttgcatgggctctatcatgtgttgcatgccataataaagttgtgtttcatgttgtatgttgaatttttttacaagccaacggtattaagttgtatattg |
44236564 |
T |
|
| Q |
107 |
tataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaact |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236563 |
tataattttgtagattttggggttggatatatgcgcggataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaact |
44236464 |
T |
|
| Q |
207 |
acaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44236463 |
acaggagagatgttggttggaccagccaatgcattgttcatggatg-aatttctactgggctggacagttccacaacttttcagattgtgagctctctga |
44236365 |
T |
|
| Q |
307 |
gacaatatgttcacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattatcttaatctctg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44236364 |
gacaatatgttcacattatgaatggcactgcagttatatcactgctccaaccagcacctgagacttatgatctttttgatgacattatcttaatctctg |
44236266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 105 - 405
Target Start/End: Complemental strand, 44213591 - 44213291
Alignment:
| Q |
105 |
tgtataattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaa |
204 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| || ||||||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||| | |
|
|
| T |
44213591 |
tgtacaattttgcagattttggggttggatatatgtgcggataccatggtaggggatgaaatgttgcgtggtatctccggaggacaaaggaagcgtgtta |
44213492 |
T |
|
| Q |
205 |
ctacaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctct |
304 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
44213491 |
ccacaggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactggactggacagttccacaacttttcaaattgtgagctctct |
44213392 |
T |
|
| Q |
305 |
gagacaatatgttcacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattatcttaatctct |
404 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
44213391 |
gaggcaatatgttcacattatgaatggcactgcagttatatcactgctccagccagcacctgagacttatgatctttttgatgacattatcttaatatct |
44213292 |
T |
|
| Q |
405 |
g |
405 |
Q |
| |
|
| |
|
|
| T |
44213291 |
g |
44213291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 121 - 394
Target Start/End: Complemental strand, 2900878 - 2900605
Alignment:
| Q |
121 |
ttttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagatgtt |
220 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||| |||||||| || ||||| || || |||||||| ||||| |
|
|
| T |
2900878 |
ttttggggttggatgtatgtgctgatactatggtggggaatgaaatgttacgtggtatctccggaggacaaagaaagcgagttaccacaggagaaatgtt |
2900779 |
T |
|
| Q |
221 |
ggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgagacaatatgttcac |
320 |
Q |
| |
|
|||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||| ||||| || ||||||| ||||| || ||||||||||| |
|
|
| T |
2900778 |
ggttggaccagcaaatgctttattcatggatgaaatatctactggcttggacagttccacaactttccaaattgtgaaatctcttaggcaatatgttcat |
2900679 |
T |
|
| Q |
321 |
attatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattat |
394 |
Q |
| |
|
||| | ||||| ||||||||||| || |||| || |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2900678 |
attcttaatggaactgcagttatctctttgcttcaaccagcaccagagacttatgaactttttgatgacattat |
2900605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 110 - 394
Target Start/End: Original strand, 2884075 - 2884359
Alignment:
| Q |
110 |
aattttgtagattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactaca |
209 |
Q |
| |
|
|||| ||||| ||||||| |||||| |||| ||||| || |||||||| |||||||||| |||||||| || ||||| || || ||||| || || ||| |
|
|
| T |
2884075 |
aattatgtagcttttgggattggatgtatgtgctgacactatggtggggaatgaaatgttgcgtggtatttccggaggtcaaagaaagcgagttaccaca |
2884174 |
T |
|
| Q |
210 |
ggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgagac |
309 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||| || |||||||| ||||| | |
|
|
| T |
2884175 |
ggagagatgttggtcgggccagcaaatgcattattcatggatgaaatatctactggtttggacagttccacaactttccaaattgtgagatctcttcagc |
2884274 |
T |
|
| Q |
310 |
aatatgttcacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattat |
394 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||| || | ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2884275 |
aatatgttcacattcttaatggaaccacagttatctctttactccaaccagcacctgagacttatgaactttttgatgacattat |
2884359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 118 - 394
Target Start/End: Original strand, 2874089 - 2874365
Alignment:
| Q |
118 |
agattttggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacaggagagat |
217 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| || ||||| || ||| | | || |||||||| || |
|
|
| T |
2874089 |
agatattggggttggatatatgtgctgataccatggtaggagatgaaatgcaccgtggtatctccggtggacaaagaaagagacttaccacaggagaaat |
2874188 |
T |
|
| Q |
218 |
gttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgagacaatatgtt |
317 |
Q |
| |
|
||||||||||||| | || | | |||||||||||||| || ||||| | || |||||||| ||||||| ||||||| ||||| || ||||||||| |
|
|
| T |
2874189 |
gttggttggaccatcgaaagttctattcatggatgaaatatcaactggcttagatagttccacagcttttcaaattgtgaaatctcttaggcaatatgtt |
2874288 |
T |
|
| Q |
318 |
cacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattat |
394 |
Q |
| |
|
| ||| | |||| |||||| |||| ||| |||| || |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
2874289 |
tatattcttcatggaactgcacttatctcattgcttcagccagcaccagagacttatgaactttttgatgacattat |
2874365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 323
Target Start/End: Original strand, 39360711 - 39360825
Alignment:
| Q |
209 |
aggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgaga |
308 |
Q |
| |
|
||||||||||||||||||||| | || || || |||||||||||||| |||||||| |||| || || || |||||||| ||||||| || |||| |
|
|
| T |
39360711 |
aggagagatgttggttggaccgactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtgaattcaatgagg |
39360810 |
T |
|
| Q |
309 |
caatatgttcacatt |
323 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39360811 |
caatatgttcacatt |
39360825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 208 - 394
Target Start/End: Complemental strand, 39550912 - 39550726
Alignment:
| Q |
208 |
caggagagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtgagctctctgag |
307 |
Q |
| |
|
|||| ||||||||||||||||| || || || | |||||||||||||| |||||||| |||| || || || |||||||||||||||| || ||| |
|
|
| T |
39550912 |
caggggagatgttggttggaccggcgaaagctctattcatggatgaaatatctactggtttggatagctcgacaacttttcagattgtgaattcaatgaa |
39550813 |
T |
|
| Q |
308 |
acaatatgttcacattatgaatggcactgcagttatatcactgctccatccagcacctgagacttatgatctttttgatgacattat |
394 |
Q |
| |
|
|||| ||| |||||| | || || ||||| || || || || || || ||| |||| |||||||| |||||||||| |||||||| |
|
|
| T |
39550812 |
gcaatttgtccacattctcaaaggaactgcggtcatctcgctccttcagccaccaccagagacttacaatctttttgacgacattat |
39550726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 39334906 - 39334990
Alignment:
| Q |
213 |
gagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtga |
297 |
Q |
| |
|
|||||||||||||||||| | || || || |||||||||||||| |||||||| |||| || || || |||||||| ||||||| |
|
|
| T |
39334906 |
gagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtga |
39334990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 297
Target Start/End: Original strand, 39346164 - 39346248
Alignment:
| Q |
213 |
gagatgttggttggaccagccaatgcattgttcatggatgaaatttctactgggctggacagttccactacttttcagattgtga |
297 |
Q |
| |
|
|||||||||||||||||| | || || || |||||||||||||| |||||||| |||| || || || |||||||| ||||||| |
|
|
| T |
39346164 |
gagatgttggttggaccaactaaagctttattcatggatgaaatatctactggtttggatagctcaacaacttttcaaattgtga |
39346248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 39592165 - 39592078
Alignment:
| Q |
124 |
tggggttggatatatgcgctgataccatggtgggagatgaaatgttacgtggtatctctggaggacagaggaagcgtgtaactacagg |
211 |
Q |
| |
|
|||| ||||| ||||| || ||||| |||||||| ||||||||||| | ||||| ||||||||||| || || |||||||| ||||| |
|
|
| T |
39592165 |
tgggattggagatatgtgcagatactgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacagg |
39592078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University