View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12702_low_1 (Length: 536)
Name: NF12702_low_1
Description: NF12702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12702_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 28 - 418
Target Start/End: Complemental strand, 7753401 - 7753018
Alignment:
| Q |
28 |
tgagttaatgaaaacagaagattcaacatatacacaaggtgcaagttataatcannnnnnnnnnnnnnnnngtagaaatcggtggaatcaatgggaaaag |
127 |
Q |
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| T |
7753401 |
tgagttaatgaaaacagaagattcaatatatacacaaggtgcaagttataatcattttttttttt------gtagaaatctgtggaatcaatgggaaaag |
7753308 |
T |
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| Q |
128 |
gtgttaccatccagtttgctgatcttaagatgaaaaaatattggtttcctttaatggtaagataaaaaattcc-tttttggttccaaatatgtactcttc |
226 |
Q |
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| T |
7753307 |
gtgttacaatccagtttgcagatcttaagatgaaaaaatattggtttcctttaatggtatgct--aaatttccttttttggttccaaatatgtattcttc |
7753210 |
T |
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| Q |
227 |
ttctcactctttttcctaaggttgcactatttaattgtcagaaaattggaaaaaaccactacttttggctgagatcctgcaggtagggattggattactt |
326 |
Q |
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| T |
7753209 |
ttctcactctttttcctaaggttgcactatttaattgtcagaaaattggaaaaaaccactacttttggctgagatcctgcaggtagggattggattactt |
7753110 |
T |
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| Q |
327 |
gtacttcagcaattgagtggaaccaatggagttttgttttattcaagtacaatctttctaaatgcaggttaggtcttcctatcagttcacaa |
418 |
Q |
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| T |
7753109 |
gtacttcagcaattgagtggaaccaatggagttttgttttattcaagtacaatctttctaaatgcaggttaggtcttcctatcagttgacaa |
7753018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 7753020 - 7752956
Alignment:
| Q |
455 |
caacatatactttctttttcctaatcttttttcattttatattgccattgctttggtcttgactt |
519 |
Q |
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| T |
7753020 |
caacatatactttctttttcctaatattttctcattttatattgccattgctttggtcttgactt |
7752956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 397
Target Start/End: Original strand, 32929905 - 32930000
Alignment:
| Q |
302 |
cctgcaggtagggattggattacttgtacttcagcaattgagtggaaccaatggagttttgttttattcaagtacaatctttctaaatgcaggtta |
397 |
Q |
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| T |
32929905 |
cctgcaggtaggaattggattacttgtacttcagcaattgagtggtatcaatggagttttgttctattcaactagcatctttgcaaatgcaggtta |
32930000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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