View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_high_12 (Length: 249)
Name: NF12703_high_12
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33426304 - 33426059
Alignment:
| Q |
1 |
cactatgttggttgagtctaattaactttcagtatggttatgactaaacaattaattatatgagg--aacttgaagattcaattcatatcaatttaataa |
98 |
Q |
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| T |
33426304 |
cactatgttggttgagtctaattaactttcactatggttatgactaaataattaatgatatgagagaaacttgaagattcaattcatattaatttaataa |
33426205 |
T |
|
| Q |
99 |
gggtttttctcacaagtattcttagaggatccacatacactca-nnnnnnnggtacctaaatacgtcacacttgtacacatcattaa-attattattttt |
196 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||| |
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| T |
33426204 |
gggtttttctcacaagtattcttagaggattcacatacactcattttttttggtacctaaatacgtcaaatttgtacacatcactaatttttttaaaaaa |
33426105 |
T |
|
| Q |
197 |
taaataataatacctaataaacagtcaatcactccaacctatgctt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33426104 |
aaaataataatacctaataaacagtcaatcactccaacctaagctt |
33426059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 32451736 - 32451797
Alignment:
| Q |
172 |
tacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaac |
234 |
Q |
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| T |
32451736 |
tacacatcactaatttataattttttaa-tagtaatacctaataagcattcaatcactccaac |
32451797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 46487103 - 46487062
Alignment:
| Q |
193 |
tttttaaataataatacctaataaacagtcaatcactccaac |
234 |
Q |
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| T |
46487103 |
ttttttaataataatacctaataaacactcaatccctccaac |
46487062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 35539738 - 35539674
Alignment:
| Q |
170 |
tgtacacatcattaaattattattttttaaataataatacctaataaacagtcaatcactccaacc |
235 |
Q |
| |
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||||||||||||| | |||| ||||||||| || || ||||||||||||| || |||||||||||| |
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| T |
35539738 |
tgtacacatcatttatttataattttttaa-tagtagtacctaataaacactcgatcactccaacc |
35539674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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