View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12703_low_1 (Length: 647)

Name: NF12703_low_1
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12703_low_1
NF12703_low_1
[»] chr7 (1 HSPs)
chr7 (10-631)||(44852074-44852703)


Alignment Details
Target: chr7 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 10 - 631
Target Start/End: Original strand, 44852074 - 44852703
Alignment:
Q  10 gtgagaagaaattagtggtagacaaaatcaatcttttgagaaatcttgaatgattgcatgtaacttttgaatgatgtttcacaatcaatgggttatacca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  44852074 gtgagaagaaattagtggtagacaaaatcaatcttttgagaaatcttgaatgattgcatgtaacttttgaatgatatttcacaatcaatgggttatacca 44852173  T
Q  110 aatttgtgtggtctaagtgataaacgcctagagtcttttaaacgtctgatcagaaatttgatctttgattcttataaatataaattaaaatttatgcatt 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44852174 aatttgtgtggtctaagtgataaacgccttgagtcttttaaacgtctgatcagaaatttgatctttgattcttataaatataaattaaaatttatgcatt 44852273  T
Q  210 gagaatacattaagaaacnnnnnnnnnnnnnntctgtaatatacatttattttggtgctctcatataaaaagttaattcaaatggtagagaatcatttta 309  Q
    ||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44852274 gagaatacattaagaaacaaaaaaaaaaaaaatctgtaatatacatttattttggtgctctcatataaaaagttaattcaaatggtagagaatcatttta 44852373  T
Q  310 aactagatcataactaggctgatatagtannnnnnnnn--------ctagtaaaagataccacgaggttcacgcgttttagtgctttgtatttacattta 401  Q
    |||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44852374 aactagatcataactaggctgatatagtatttttatttttttttttctagtaaaagataccacgaggttcacgcgttttagtgctttgtatttacattta 44852473  T
Q  402 cattttgcagcactgagtagaacgaggttttacttttcttgggtgcctcatatgatggatggaggagaaagtgttgttttcttttggcaatcgtgacatg 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44852474 cattttgcagcactgagtagaacgaggttttacttttcttgggtgcctcatatgatggatggaggagaaagtgttgttttcttttggcaatcgtgacatg 44852573  T
Q  502 ttttgtttatatattttgctgtcatgattcttgagttgagtgctcacctttgttgccattatcgtaaacgtatggagcaacatagataaagctttgaaaa 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44852574 ttttgtttatatattttgctgtcatgattcttgagttgagtgctcacctttgttgccattatcgtaaatgtatggagcaacatagataaagctttgaaaa 44852673  T
Q  602 agtctatgccactctaatttaggtaaaatt 631  Q
    ||||||||||||||||||||||||||||||    
T  44852674 agtctatgccactctaatttaggtaaaatt 44852703  T

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