View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_14 (Length: 249)
Name: NF12703_low_14
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 5066006 - 5065801
Alignment:
| Q |
31 |
agttttaccaccgtaatttttagaagctccaatgtgtaactttcttcaagttaagtccatcannnnnnnnnnn-ggaaatttaggccatgttttgttcaa |
129 |
Q |
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| T |
5066006 |
agttttaccaccgtaatttttagaagctccaatgtgtaactttattcaagttaagtccatcatttttttttcttggaaatttagaccatgttttgttcaa |
5065907 |
T |
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| Q |
130 |
ataaagatgcatgataccaattatttgttcatgttgctactaattttgattagttagaaaatgatagaatatatttgattgatttttgtaggcaaggaaa |
229 |
Q |
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| T |
5065906 |
ataaagatgcatgataccaattatttgttcatgttgctactaattttaattagttagaaaatgatagaatatatttgattgatttttgtaggcaaggaaa |
5065807 |
T |
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| Q |
230 |
agtatt |
235 |
Q |
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|||||| |
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| T |
5065806 |
agtatt |
5065801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 5066069 - 5066008
Alignment:
| Q |
8 |
gacaagtgaaaccgtaaatatagagttttaccaccgtaatttttagaagctccaatgtgtaacttt |
73 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
5066069 |
gacaagtgaaaccgtaaatatagagttttaccaccgtaa----tagaagctccaatgtgtagcttt |
5066008 |
T |
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