View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_15 (Length: 239)
Name: NF12703_low_15
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35952647 - 35952869
Alignment:
| Q |
1 |
actttggctaatcatacgtttcagtgtcttgtcggtgccgaacaccaaatatgcctgaaatctggagtctcattgttatatagatgcagcatatagctga |
100 |
Q |
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| T |
35952647 |
actttggctaatcatacgtttcagtgtcttgtcggtgccgaacaccaaatatgcctgaaatctggagtgtcattgttatatagatgcagcatatagctga |
35952746 |
T |
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| Q |
101 |
atgtttatataggcagaatatccatgaaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctat |
200 |
Q |
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| T |
35952747 |
atgtttatataggcagaatatccatgaaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggatttttcttcctat |
35952846 |
T |
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| Q |
201 |
aacaaagaaaatcaagcagtaca |
223 |
Q |
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| T |
35952847 |
aacaaagaaaatcaagcagtaca |
35952869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 219
Target Start/End: Original strand, 35972628 - 35972820
Alignment:
| Q |
31 |
gtcggtgccgaacaccaaatatgcctgaaatctggagtctca----ttgttatatagatgcagcatatagctgaatgtttatataggcagaatatccatg |
126 |
Q |
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| T |
35972628 |
gtcggtgccgaacaccaatcacgcctgaaatctggagtatatatagttgttatatagatgcagcatagagctgaatatttatataggaagaatatacata |
35972727 |
T |
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| Q |
127 |
aaaatgattaagctttgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcag |
219 |
Q |
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| T |
35972728 |
aaagtgattatgattagataatattattgttatgaacaggtggacttgatatgtatgctgcgttttcttcctctatcaaagaaaatcaagcag |
35972820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 219
Target Start/End: Original strand, 35979900 - 35979977
Alignment:
| Q |
142 |
tgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcag |
219 |
Q |
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| T |
35979900 |
tgataatattgatgtcttgcacaggtggacttcatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcag |
35979977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 35969789 - 35969867
Alignment:
| Q |
141 |
ttgataatattattgtcttgcacaggtggacttgatatgtatgcggattttccttcctataacaaagaaaatcaagcag |
219 |
Q |
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| T |
35969789 |
ttgataatattgatgtcttgcacaggtagacttaatatgtatgctgctttttcttcctctatcaaaaaaaatcaagcag |
35969867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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