View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_16 (Length: 236)
Name: NF12703_low_16
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_16 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2794363 - 2794598
Alignment:
| Q |
1 |
ttgatccagaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgaccgagaagtggagaagaggttgctggggtattttga |
100 |
Q |
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| T |
2794363 |
ttgatccggaaaattgtcgaaggcttgctgaagaggtgttgaaggttttgggtgaggctgatgacagagaagtggagaagaggttgttggggtattttga |
2794462 |
T |
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| Q |
101 |
tttgaataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagagagggat |
200 |
Q |
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| T |
2794463 |
tttgaataagtttagtcttgttaagtttctaatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagagagggat |
2794562 |
T |
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| Q |
201 |
aaaattgaggaagagatgaaggggtcgaatttggag |
236 |
Q |
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| T |
2794563 |
aaaattgaggaagagatgaaggggtcgaatttggag |
2794598 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 29261933 - 29262049
Alignment:
| Q |
106 |
ataagtttagtcttgttaagtttctgatgcagaataagttgaagattgtgtggtgtactagcttggccagggcgagggatcaagaagagagggataaaat |
205 |
Q |
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| T |
29261933 |
ataagtttagtcttattaagtttttgttgcgaaataggctgaaaattttgtggtgtactcgtttggcgagggcacaagatcaggaagagagagagacgat |
29262032 |
T |
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| Q |
206 |
tgaggaagagatgaagg |
222 |
Q |
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| T |
29262033 |
tgaggaagagatgaagg |
29262049 |
T |
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