View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12703_low_2 (Length: 547)

Name: NF12703_low_2
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12703_low_2
NF12703_low_2
[»] chr8 (2 HSPs)
chr8 (13-260)||(9284011-9284257)
chr8 (321-498)||(9283774-9283950)
[»] chr5 (2 HSPs)
chr5 (13-156)||(19918338-19918481)
chr5 (17-126)||(24665859-24665968)
[»] scaffold0039 (1 HSPs)
scaffold0039 (20-153)||(49599-49732)
[»] chr7 (4 HSPs)
chr7 (13-126)||(24254438-24254551)
chr7 (13-145)||(9023349-9023481)
chr7 (14-154)||(13271539-13271678)
chr7 (38-126)||(9961201-9961289)
[»] chr2 (1 HSPs)
chr2 (16-156)||(25518351-25518491)
[»] chr1 (1 HSPs)
chr1 (47-126)||(43362643-43362722)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 9284257 - 9284011
Alignment:
Q  13 cactggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||| || |||||||||||||||||    
T  9284257 cactggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttcgttaactcttttggggatgttcgacaaacctagaggatttggtttaaa 9284158  T
Q  113 gttttatgccaattcttgggttgaacatgtgtatgattctttataaatatatttctaagtcctctttcaacctaaatttgtttacatnnnnnnngggaaa 212  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  9284157 -ttttataccaattcttgggttgaacatgtgtatgattctttataaatatatttctaagtcctctttcaacctaaatttgtttacataaaaaaagggaaa 9284059  T
Q  213 taaattattactgatagctagacatacaatgatttttagtttttcttt 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||    
T  9284058 taaattattactgatagctagacatacaatgatttttaatttttcttt 9284011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 321 - 498
Target Start/End: Complemental strand, 9283950 - 9283774
Alignment:
Q  321 ggggtttatttgtttacaagacaatttaaaattgttttacgcatgcttctaataacatctcttcatgatcacacattcttagattacttcataaaacatc 420  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9283950 ggggtttattcgtttaca-gacaatctaaaattgttttacgcatgcttctaataacatctcttcatgatcacacattcttagattacttcataaaacatc 9283852  T
Q  421 tccataaatatatatctacttggcaaaacttgatatgatgtatatgcacaaaaagtttacattttcagtacatatata 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9283851 tccataaatatatatctacttggcaaaacttgatatgatgtatatgtacaaaaagtttacattttcagtacatatata 9283774  T

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Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 19918481 - 19918338
Alignment:
Q  13 cactggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaa 112  Q
    ||||||||||||||  || | ||| ||||||| |||||||| |||   ||| |||||||||||| || |||||||||||||||| |||||||||||||||    
T  19918481 cactggtaaaactgcatcttgcccaaaagccaaacgaaatggtgtaaggtttgttgactcttttagggatgttcgacaagcccaaaggatttggtttaaa 19918382  T
Q  113 gttttatgccaattcttgggttgaacatgtgtatgattctttat 156  Q
    ||||||||||| || || |||||| |||||||||| ||||||||    
T  19918381 gttttatgccatttttttggttgagcatgtgtatgcttctttat 19918338  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 24665859 - 24665968
Alignment:
Q  17 ggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaagttt 116  Q
    |||||||||| ||||| ||| ||||||| |||||||| ||| || || |||||||| |||||  |||||||||||||||| ||||||  |||||||||||    
T  24665859 ggtaaaactgcgtcgtgcccaaaagccaaacgaaatggtgtagaatttgttgactcatttggagatgttcgacaagcccaaaggattcagtttaaagttt 24665958  T
Q  117 tatgccaatt 126  Q
    ||| ||||||    
T  24665959 tattccaatt 24665968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 49732 - 49599
Alignment:
Q  20 aaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaagttttat 119  Q
    |||||||  |||| ||| |||||||||||||||| ||| ||||| |||||||| ||||   |||||||||||||| | |||||| |||||||||||||||    
T  49732 aaaactgcatcgtgcccaaaagccagacgaaatggtgtagagtttgttgactcctttgaagatgttcgacaagccaaaaggattcggtttaaagttttat 49633  T
Q  120 gccaattcttgggttgaacatgtgtatgattctt 153  Q
    | ||| |||| |||| ||||||| |||| |||||    
T  49632 gtcaactctttggtttaacatgtatatgtttctt 49599  T

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Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 24254438 - 24254551
Alignment:
Q  13 cactggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaa 112  Q
    |||| |||||| |||||||| ||| ||||||| |||||||| ||| ||||| ||||||||||||||  |||||| | | ||||| |||||| ||||||||    
T  24254438 cactagtaaaattgtgtcgtgcccaaaagccaaacgaaatggtgtagagtttgttgactcttttggagatgttctagatgcccaaaggattcggtttaaa 24254537  T
Q  113 gttttatgccaatt 126  Q
    || |||||||||||    
T  24254538 gtcttatgccaatt 24254551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 9023481 - 9023349
Alignment:
Q  13 cactggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaa 112  Q
    ||||| ||||| || ||||| ||| ||||||| |||||||| ||| ||||| ||||| ||||||||  |||||||||||||||| |||||||||||| ||    
T  9023481 cactgctaaaattgcgtcgtgcccaaaagccaaacgaaatggtgtagagtttgttgattcttttggagatgttcgacaagcccaaaggatttggtttgaa 9023382  T
Q  113 gttttatgccaattcttgggttgaacatgtgta 145  Q
    ||  | |||||||| || ||||  |||||||||    
T  9023381 gtcctgtgccaatttttcggtttcacatgtgta 9023349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 14 - 154
Target Start/End: Original strand, 13271539 - 13271678
Alignment:
Q  14 actggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaag 113  Q
    ||||||||||||| |||||   | |||| || |||||||| ||| |||||| || ||||||||||| ||||||||| |||||| || |||||||||| ||    
T  13271539 actggtaaaactgcgtcgtgagcaaaagtcaaacgaaatggtgtagagttg-ttaactcttttggggatgttcgaccagcccaaagtatttggtttagag 13271637  T
Q  114 ttttatgccaattcttgggttgaacatgtgtatgattcttt 154  Q
    ||||| ||||||| || |||||| |||| ||||| ||||||    
T  13271638 ttttaagccaatttttcggttgagcatgagtatgcttcttt 13271678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 38 - 126
Target Start/End: Original strand, 9961201 - 9961289
Alignment:
Q  38 aaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaagttttatgccaatt 126  Q
    ||||||| || ||||| ||| ||||| ||||||||||||||  |||||| ||||   || ||||||  ||||||| |||||||||||||    
T  9961201 aaagccaaacaaaatggtgtagagtttgttgactcttttggagatgttcaacaaaatcaaaggattcagtttaaatttttatgccaatt 9961289  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 25518491 - 25518351
Alignment:
Q  16 tggtaaaactgtgtcgtacccgaaagccagacgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaagtt 115  Q
    ||||||||||||||| | ||||||||| |||||||||  | | ||||| ||||  ||||||||| ||||||||||| |||| |  || |  |||||||||    
T  25518491 tggtaaaactgtgtcatccccgaaagctagacgaaatagtctagagtttgttgtatcttttggggatgttcgacaaacccacaatatctaatttaaagtt 25518392  T
Q  116 ttatgccaattcttgggttgaacatgtgtatgattctttat 156  Q
    ||||||||  | || |||||| |||||||||| ||||||||    
T  25518391 ttatgccatatttttggttgagcatgtgtatgcttctttat 25518351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 43362722 - 43362643
Alignment:
Q  47 cgaaatgatgttgagttggttgactcttttgggaatgttcgacaagcccagaggatttggtttaaagttttatgccaatt 126  Q
    ||||||| ||| ||||| ||||||||||||||  |||||||||||||||| | |||| |   ||||||||||||||||||    
T  43362722 cgaaatggtgtagagtttgttgactcttttggagatgttcgacaagcccaaatgattcgacctaaagttttatgccaatt 43362643  T

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