View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12703_low_20 (Length: 226)
Name: NF12703_low_20
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_20 |
 | |
|
| [»] chr3 (6 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35952432 - 35952657
Alignment:
| Q |
1 |
ttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaag |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35952432 |
ttattccaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaag |
35952531 |
T |
|
| Q |
101 |
gtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattca |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35952532 |
gcatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattca |
35952631 |
T |
|
| Q |
201 |
taagaatcagaaacaactttggctaa |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
35952632 |
taagaatcagaaacaactttggctaa |
35952657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 35972385 - 35972607
Alignment:
| Q |
1 |
ttatttcaaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaag |
100 |
Q |
| |
|
||||| |||||| ||||||| |||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
35972385 |
ttattccaaaccgacatatatgactacagagtctggttctcctcatatgccaacttattactcaactgtggaagtagagggcttgaaatttcatggcaag |
35972484 |
T |
|
| Q |
101 |
gtatctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattca |
200 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
35972485 |
gcatctagatccaaaaaacaggcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcattcagtttttttttctttcattca |
35972584 |
T |
|
| Q |
201 |
taagaatcagaaacaactttggc |
223 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
35972585 |
taagaatcacaaacaactttggc |
35972607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 35979567 - 35979742
Alignment:
| Q |
33 |
ctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggtatctagatccaaaaaacaagcagatattga |
132 |
Q |
| |
|
||||| ||| |||||||| ||||| |||||||||||| |||||||| || || ||||||||||||||| |||||| ||||||||| | ||||| ||| |
|
|
| T |
35979567 |
ctggtcctcctcatatgccaacttttttctcaactgttgaagtagaaggcgtggaatttcatggaaaggcatctagttccaaaaaagaggcagaatatga |
35979666 |
T |
|
| Q |
133 |
tgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcattcataagaatc |
208 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| || ||||||||||| ||||||| |||||||||| |
|
|
| T |
35979667 |
tgctgcaaagattgcttacaaggccttaaaagatggtaagtttattcacttgattttgctttcatgcataagaatc |
35979742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 35969427 - 35969617
Alignment:
| Q |
7 |
caaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggtatct |
106 |
Q |
| |
|
|||||||||||||| ||||| | || ||||||| |||||||||| ||||| ||||||| |||| ||||||||||| || | ||||||||||| | |||| |
|
|
| T |
35969427 |
caaaccaacatataaaactacacagactggttcccttcatatgccaacttttttctcagctgttgaagtagagggtgtggagtttcatggaaatgcatct |
35969526 |
T |
|
| Q |
107 |
agatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttgatttttctttcat |
197 |
Q |
| |
|
|||||||||||| | ||||| ||||||||||||||||||||||| ||| ||||||| |||| || || |||||||||| ||||||| |
|
|
| T |
35969527 |
agatccaaaaaagaggcagaacgtgatgctgcaaagattgcttacaaggccataaaagatggtaaatttattcacttgatttaactttcat |
35969617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 35956485 - 35956662
Alignment:
| Q |
7 |
caaaccaacatatacaactatagagtctggttctcttcatatgcgaacttatttctcaactgtggaagtagagggattgaaatttcatggaaaggtatct |
106 |
Q |
| |
|
|||||||||||||| ||||| | | |||| ||| |||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
35956485 |
caaaccaacatataaaactacacaaattggtcctcctcatatgccaacttttttctcaactgtggaagtagagggcatcggatttcatggaaaggcatct |
35956584 |
T |
|
| Q |
107 |
agatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcatgcacttg |
184 |
Q |
| |
|
| ||||||||| | ||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
35956585 |
aaatccaaaaacaaggcagaagaagatgccgcaaagattgcttacatcaccttaaaagagtgtaagttcattcacttg |
35956662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 35974470 - 35974544
Alignment:
| Q |
103 |
atctagatccaaaaaacaagcagatattgatgctgcaaagattgcttacattgccttaaaagagtgtaagttcat |
177 |
Q |
| |
|
||||||||||| |||| | ||||| |||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35974470 |
atctagatccataaaagaggcagaacatgatgctgaaaagattgcttacattaccttaaaagagtgtaagttcat |
35974544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University