View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_3 (Length: 478)
Name: NF12703_low_3
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 459
Target Start/End: Original strand, 47585409 - 47585849
Alignment:
| Q |
14 |
cagagaggtggatgccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgg |
113 |
Q |
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| T |
47585409 |
cagagaggtggatgccgggaaagtttgatattgctggccatagtcaccaactttttcatgtcttggttgtggcgggggcatatacacattaccgtgatgg |
47585508 |
T |
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| Q |
114 |
gttaatttaccttagatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaactta |
213 |
Q |
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| T |
47585509 |
gttaatttaccttagatggagagatttgaaaggctgttaattaggccggtagggagtctgttgtaggtactttggctttctttttgttgttcaaaactt- |
47585607 |
T |
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| Q |
214 |
gagatattggatgaaagatgaagaaagtgattgtgtattattgtatagaaaaaagctccatgcttcttttttgtgttagatttatgaatctaaaaacaaa |
313 |
Q |
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| T |
47585608 |
-agatattggatgaaagatgaagaaagtgattgtgtattattgtatagaaaaaagcttcatgcttcttttttgtgttagatttatgaatctaaaaacaaa |
47585706 |
T |
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| Q |
314 |
gaggtaaatctaagagaatacatggattttttgttctatcaaaagtatgtagtatattacatgtaaatccttcaaatattatctttggaacaataattta |
413 |
Q |
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| T |
47585707 |
gaggtaaatctaagagaatacatggattttttgttctatcaaaagtatgtagta---tacatgtaaatccttcaaatattatctttggaacaataattta |
47585803 |
T |
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| Q |
414 |
agaacattccctgaggcggcattttagatgttgtaaatgaagtgtt |
459 |
Q |
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| T |
47585804 |
agaacattccctgaggcggcattttagatgttgtaaatgaagtgtt |
47585849 |
T |
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