View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_4 (Length: 439)
Name: NF12703_low_4
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Complemental strand, 280014 - 279584
Alignment:
| Q |
20 |
tgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttggga |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
280014 |
tgtaccatcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttggga |
279915 |
T |
|
| Q |
120 |
tcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagtt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
279914 |
tcatagaactttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagtt |
279815 |
T |
|
| Q |
220 |
ttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacc |
319 |
Q |
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| T |
279814 |
ttacaggacccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgacctactgtaacacttaataaacttataatattggtacc |
279715 |
T |
|
| Q |
320 |
ttgatttaaagagatgttcccttcatgtataaa------------------accatgttgtgtacccgtaaaaaatccattaataaataaataaagaata |
401 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
279714 |
ttgatttaaagagatgttcccttcatgtataaaaccaggttgactaacggtaccatgttgtgtacccgtcaaaaatccattaataaataaataaagaata |
279615 |
T |
|
| Q |
402 |
tgacctgttgtattcacttgcacctttgctt |
432 |
Q |
| |
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| T |
279614 |
tgacctgttgtattcacttgcacctttgctt |
279584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 290452 - 290148
Alignment:
| Q |
27 |
tcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcataga |
126 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||| || |||||||||||||| ||||| |||| ||||| || |||| | |||||||||||||| |
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| T |
290452 |
tcaggggtcttgaaagtggtcttgtaccaagtcattggtccttctatagaaacattacgtgtttgccatggaactacattggtagatttgggatcataga |
290353 |
T |
|
| Q |
127 |
actttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagg |
226 |
Q |
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| T |
290352 |
actttctagccacaccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtttggatattcagttgaaatgagtttcgcagg |
290253 |
T |
|
| Q |
227 |
acccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtaccttgattt |
326 |
Q |
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| T |
290252 |
accgccaacaataccagtttctttcatatcaatgtacccactacaatttgatttgccaagtgtaacacttaacaaacttataatattggcaccttgtttc |
290153 |
T |
|
| Q |
327 |
aaaga |
331 |
Q |
| |
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||||| |
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| T |
290152 |
aaaga |
290148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 27 - 320
Target Start/End: Complemental strand, 24532176 - 24531886
Alignment:
| Q |
27 |
tcaggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcataga |
126 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| || | ||||| |||||||| | | |||||||||||||| |
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| T |
24532176 |
tcaggggtcttgaaagtggtcttgtaccaagtcattggtactcctatagaaacattacgtggtatccatggaactccattaga---tttgggatcataga |
24532080 |
T |
|
| Q |
127 |
actttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagg |
226 |
Q |
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||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| | |
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| T |
24532079 |
actttctagccataccattcatcccaactttgtatgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttaacatg |
24531980 |
T |
|
| Q |
227 |
acccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
320 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24531979 |
acccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24531886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 29 - 320
Target Start/End: Complemental strand, 24525502 - 24525213
Alignment:
| Q |
29 |
aggggtcttgaaagtagtcttataccaagtcattggtactcctatagaaacattatttgttttccattgaactccaatggtggttttgggatcatagaac |
128 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| || | ||||| |||||||| | | | ||||||| |||||| |
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| T |
24525502 |
aggggtcttgaaagtggtcttgtaccaagtcattggtactcctgtagaaacattacgtggtatccatggaactccattaga---tctgggatcttagaac |
24525406 |
T |
|
| Q |
129 |
tttttagtcataccatttatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtttggattttcgattgaaaagagttttacagga- |
227 |
Q |
| |
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||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||| || |
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| T |
24525405 |
tttctagccataccattcatcccaactttgtacgaccaagtagattttgataaatccaaaacattgtctggatattcaattgaaatgagtttcacatgac |
24525306 |
T |
|
| Q |
228 |
cccccaacaatgccagtttcttgcatatcaaagaacgcaccgtaatttgcatgaccaactgtaacacttaataaacttataatattggtacct |
320 |
Q |
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||||||||||| |||||||||| |||||||| |||| ||| |||||| | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
24525305 |
cccccaacaataccagtttctttcatatcaatgaacccactacaatttgatttaccaagtgtaacacttaataaacttataatattggtacct |
24525213 |
T |
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