View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_6 (Length: 407)
Name: NF12703_low_6
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 29007286 - 29007675
Alignment:
| Q |
1 |
ttgaattgtacagggttgatgttatgtgcagttgtgtcgttgagttcaattgagatcttcgaaaggcacgaatggctaaaagtgacttcaactgtgtatt |
100 |
Q |
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| T |
29007286 |
ttgaattgtacagggttgatgttatgtgcagttgtgtcgttgagttcaattgagatcttcgaaaggcacgagtggctaaaagtgacttcaactgtgtatt |
29007385 |
T |
|
| Q |
101 |
tcctttgtgaaggtgagaacaagaacgtgtttgaagatgttaagagagctcgttttgtttatgcttacaatggtcaacaatcttggaaggttagattcta |
200 |
Q |
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| T |
29007386 |
tcctttgtgaaggggagaacaagaacgtgtttgaagatgttaagagagctcgttttgtttatgcttacaatggtcaacaatcttggaaggttagattcta |
29007485 |
T |
|
| Q |
201 |
ttatgcttttttaaaattaagataaatttgattttgtgtccattctaaggtagttcatttgaagttagttaatcaatcgtgtaatacacgtgttttagtg |
300 |
Q |
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| T |
29007486 |
ttatgcttttttaaaattaagataaatttgattttatgtccattctgaggtagttcatttgaagttagttaatcaatcgtgtaatacacgtgttttagtg |
29007585 |
T |
|
| Q |
301 |
tttctgtttacactttcaaatttggttgtatattcttagagtaagggtgtctttggattggcttatgtaagtttatctaccgacataaat |
390 |
Q |
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| T |
29007586 |
tttctgtttacactttcaaatttggttgtatgttcttagagtaagggtgtctttggattagcttatgtaagtttatctaccaacataaat |
29007675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 388
Target Start/End: Complemental strand, 34857613 - 34857567
Alignment:
| Q |
342 |
taagggtgtctttggattggcttatgtaagtttatctaccgacataa |
388 |
Q |
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| T |
34857613 |
taagggtctatttggattggcttatttaagtttatctaccaacataa |
34857567 |
T |
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