View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_8 (Length: 340)
Name: NF12703_low_8
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 47 - 333
Target Start/End: Original strand, 38226084 - 38226344
Alignment:
| Q |
47 |
cagaaaccttcaccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttggaataagaagcaaatgaaaa |
146 |
Q |
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| T |
38226084 |
cagaaaccttcaccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttggaataagaagcaaatga--- |
38226180 |
T |
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| Q |
147 |
agtaagtactgagaataaaaaggacgaggaattggaggagtggtgtgggttgaattgagtaaactcacgca-gggtattttggtcatttacattaaaaat |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
38226181 |
-----------------aaaaggacgaggaattggaggagtggtgtgggttgaattgagtaaactcacgcaggggtattttggtcatttac-------at |
38226256 |
T |
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| Q |
246 |
taaaaatgggcaaaatcatttgggtgaagagcagaattcgtgtgtgaatcctctctctttctcaatctatctttccacgcgatctgtg |
333 |
Q |
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| T |
38226257 |
tggaaatgggcaaaatcatttgggtggagagcagaattcgtgtgtgaatcctctctctttctcaatctatctttccacgcgatctgtg |
38226344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 14659329 - 14659262
Alignment:
| Q |
59 |
ccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttg |
126 |
Q |
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| T |
14659329 |
ccatttcaatggaactagagggagttcttgaataatattgatataaaaattgccgtttcattaatttg |
14659262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 13715305 - 13715365
Alignment:
| Q |
50 |
aaaccttcaccatttcaatggaactagagga-agttgttgaatagtattgatataaaaatg |
109 |
Q |
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| T |
13715305 |
aaaccatcaccatttcaatggaactgtaggggagttgttgaatagtattgatataaaaatg |
13715365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 4848709 - 4848649
Alignment:
| Q |
49 |
gaaaccttcaccatttcaatggaactagagga-agttgttgaatagtattgatataaaaat |
108 |
Q |
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|||||| |||||||||||||| |||| ||| |||||||||||| ||||||||||||||| |
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| T |
4848709 |
gaaaccatcaccatttcaatgcaactgcaggggagttgttgaataatattgatataaaaat |
4848649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 22917273 - 22917209
Alignment:
| Q |
49 |
gaaaccttcaccatttcaatggaactaga-ggaagttgttgaatagtattgatataaaaatggaa |
112 |
Q |
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| T |
22917273 |
gaaaccatcaccctttcaatggaactacatgggagttgttgaatagtattgatataaaaatggaa |
22917209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 6127399 - 6127320
Alignment:
| Q |
51 |
aaccttcaccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttggaat |
130 |
Q |
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||||| || |||||||||||||| ||||| |||| ||||||| ||||||||||||||| | |||||| ||||||||||| |
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| T |
6127399 |
aacctacatcatttcaatggaaccagagggagttcttgaataatattgatataaaaattgccgtttcattaatttggaat |
6127320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 130
Target Start/End: Complemental strand, 44398549 - 44398478
Alignment:
| Q |
59 |
ccatttcaatggaactagaggaagttgttgaatagtattgatataaaaatggaagtttcactaatttggaat |
130 |
Q |
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|||||||||||||| ||||| |||| ||||||| ||||||||||||||| | |||||||||||||||||| |
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| T |
44398549 |
ccatttcaatggaatcagagggagttcttgaataatattgatataaaaattgccgtttcactaatttggaat |
44398478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 45908069 - 45908130
Alignment:
| Q |
49 |
gaaaccttcaccatttcaatggaactagagga-agttgttgaatagtattgatataaaaatg |
109 |
Q |
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|||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
45908069 |
gaaaccatcaccatttcaatggaactgcaggggagttgttgaatagtattgatataaaaatg |
45908130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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