View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12703_low_9 (Length: 290)
Name: NF12703_low_9
Description: NF12703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12703_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 274
Target Start/End: Original strand, 485438 - 485715
Alignment:
| Q |
11 |
caaaggccggctagaatattgtaacatgcaaatgcaattatatactaaagaattaatatataccactttaccagttttgtgaagtcttaatttagtannn |
110 |
Q |
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| T |
485438 |
caaaggccggctagaatattgtaacatgcaaatgcaattatatactaaagaattaatatataccactttaccagttttgtgaagtcttaatttagtattt |
485537 |
T |
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| Q |
111 |
nnnnnaacatcatc----------attaatatactaatatatactta----gtcgcattatgaagtaagctgtgtactattcttgaatgactttcattga |
196 |
Q |
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| T |
485538 |
tttttaacatcatctatgatcatcattaatatactaatatatacttaattagtcgcattatgaagtaagctgtgtactattcttgaatgactttcattga |
485637 |
T |
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| Q |
197 |
agcatgaaactggccaaaataaaatcaccaaacaagaaagttttgattttgttgagacctatgttcacgcttaaaact |
274 |
Q |
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| T |
485638 |
agcatgaaactggccaaaataaaatcaccaaacaagaaagttttgattttgttgagacctatgtttacgcttaaaact |
485715 |
T |
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