View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12704_high_2 (Length: 344)
Name: NF12704_high_2
Description: NF12704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12704_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 339
Target Start/End: Original strand, 41776895 - 41777209
Alignment:
| Q |
25 |
ggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccactgatgtggctgactgcgtgactgcat |
124 |
Q |
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| T |
41776895 |
ggtggccattgaatcaagaatggacgtcaagcttggtattttatctggactgttcgatcttaaccaattgccaccaatgtggctgactgcgtgactgcat |
41776994 |
T |
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| Q |
125 |
tagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaacttaagcaatttaacttaca |
224 |
Q |
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| T |
41776995 |
tagattatgcctacacacaacccaaatctgtttcccaaatcccttcacatgcatgacacagtttgattttaagctaaaaacttaagcaatttaacttaca |
41777094 |
T |
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| Q |
225 |
aggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttcccc |
324 |
Q |
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| T |
41777095 |
aggattttgattgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctactcaagaggttcccc |
41777194 |
T |
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| Q |
325 |
attccctatgctact |
339 |
Q |
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| T |
41777195 |
attccctatggtact |
41777209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 41308303 - 41308348
Alignment:
| Q |
99 |
tgatgtggctgactgcgtgactgcattagattatgcctacacacaa |
144 |
Q |
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| T |
41308303 |
tgatgtggctgactgcgtgactgcatcagattgtgactacatacaa |
41308348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 26957042 - 26956953
Alignment:
| Q |
234 |
attgcaggttgctagtgcaacagcgacatttgtgatgatgttttcatcatcattgtctgtggttgaattctacctgctcaagaggttccc |
323 |
Q |
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| T |
26957042 |
attgtaggttgctagtgcaacagcaacatttgtgatgatgttttcatcatctttgtctgtttttgagttctacattctcaagaggttccc |
26956953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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