View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12704_low_1 (Length: 437)
Name: NF12704_low_1
Description: NF12704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12704_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 48 - 421
Target Start/End: Original strand, 33600018 - 33600391
Alignment:
| Q |
48 |
gaaatacgtctaggtgctcacgagcagaaattgactcgcggtagcattgattgaactaatcaaagactgaatttttaagagaaattcagatacagaattc |
147 |
Q |
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| T |
33600018 |
gaaatacgtctaggtgctcacgagcagaaattgactctcggtagcattgattgaactaatcaaagactgaatttttaagagaaattcagatacagaattc |
33600117 |
T |
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| Q |
148 |
ttccaggtttcaagcacggtgcttcacaaatcagaacaaagctggcagagtttggcatgactatgttgctgaaagtatgcatgaactttatcccaaagta |
247 |
Q |
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| T |
33600118 |
ttctaggtttcaagcacggtgcttcacaaatcagaacaaagctggcagagtttggcatgactatgttgctgaaagtatgcatgaactttatcccaaagta |
33600217 |
T |
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| Q |
248 |
tttaagagtgctttcacccagtaatacacataagcatctccttcttgatagtagattggagccaagacaaaacaatttggtcctgttgctcccaagcatc |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600218 |
tttaagagtgctttcacccagtaatacacataagcatctccttcttgatagtagattggagccaagacaaaacaatttggtcctgttgctcccaagcatc |
33600317 |
T |
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| Q |
348 |
aagttctggtgtaacgcaatttgcgtccacatcttcaagagttctgaatttggaaggatttgaaggattgatca |
421 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33600318 |
aagttctggcgtaacgcaatttgcgtccacatcttcaagagttctgaatttggaaggatttgaaggattgatca |
33600391 |
T |
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