View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12704_low_2 (Length: 364)
Name: NF12704_low_2
Description: NF12704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12704_low_2 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 364
Target Start/End: Original strand, 4927857 - 4928206
Alignment:
| Q |
15 |
gggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatggaacggcatttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | || || |||| |
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| T |
4927857 |
gggcgatatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacagatgtatttaggggacaaggtttc |
4927956 |
T |
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| Q |
115 |
aagaatgaaattgaactccattgccagctttatcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgaggaaattctcgtgtataaaa |
214 |
Q |
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| T |
4927957 |
aagaatgaaatagaacacctctgccagctttgtcacccaaatttgatatcttttataggattttgtgaccaaaaaaataagaaaattctcgtgtataaaa |
4928056 |
T |
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| Q |
215 |
atgatgaaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgc |
314 |
Q |
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| T |
4928057 |
aagatgaaatggtcaatggcactctccaagatcacttaggttcgagggatatggaatcactctcgtggaagaaaaggcttgaaatatgcattggagctgc |
4928156 |
T |
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| Q |
315 |
aaaaggactccactatcttcaccctggaacaaagcgtccgattttccacc |
364 |
Q |
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| T |
4928157 |
aaaaggactacactatcttcacactggaacaaagcgtccgattttccacc |
4928206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 364
Target Start/End: Original strand, 4921620 - 4921965
Alignment:
| Q |
20 |
atatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatggaacggcatttcaagaa |
119 |
Q |
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| T |
4921620 |
atatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataaaagatacatacatgaaagaaacgttcaagaa |
4921719 |
T |
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| Q |
120 |
tgaaattgaactccattgccagctttatcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgat |
219 |
Q |
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| T |
4921720 |
tgaaattgaactccactgccagatttgtcatccaaatttgatatctttgataggattttgtgaccaaaaaaatgagaaaattctcgtgtataaaaaagat |
4921819 |
T |
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| Q |
220 |
gaaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatcactctcgtgg-nnnnnnnggctagaaatatgcattggagctgcaaaa |
318 |
Q |
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| T |
4921820 |
gaaatggtcaatggctctctccgtgatcacttatgttcaagggacacggtttcactctcttggaaaaaaaaggcttgaaatatgcattggagctgcaaaa |
4921919 |
T |
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| Q |
319 |
ggactccactatcttcaccctggaacaaagcgtccgattttccacc |
364 |
Q |
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| T |
4921920 |
ggactgcactaccttcacactggagcaaagcgcccgattttccacc |
4921965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 350
Target Start/End: Complemental strand, 4908340 - 4908024
Alignment:
| Q |
28 |
tacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatggaacggcatttcaagaatgaaattg |
127 |
Q |
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|||||||| ||| ||||| |||||||||||| |||||||||||||||| || ||||| | | ||| ||| | ||| || | |||||||| ||||||| |
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| T |
4908340 |
tacaaaggttatctcaaacataatggtgaaactgattatccaatagcagtgaaacggatgatacatatatttaatgaatggaagttcaagaaggaaattg |
4908241 |
T |
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| Q |
128 |
aactccattgccagctttatcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatgaaatggt |
227 |
Q |
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| T |
4908240 |
aactcaactgccagcttcatcacccaaatttgacgtcttttataggattctgtgaccacaagtatgagaaaattcttgtgtat------gagtacatgtc |
4908147 |
T |
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| Q |
228 |
caatggcactctccatgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactccac |
327 |
Q |
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| T |
4908146 |
caatggctctctctatgatcacctacttttgagggatatggaatcattgtcatggaagaaaaggctagaaatatgcattggagctgcaaaaggactacac |
4908047 |
T |
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| Q |
328 |
tatcttcaccctggaacaaagcg |
350 |
Q |
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| T |
4908046 |
taccttcacactggagcaaagcg |
4908024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 350
Target Start/End: Complemental strand, 4904423 - 4904100
Alignment:
| Q |
21 |
tatagtctacaaaggctatgtcaaatataatggtgaaaatgattatccaatagcattgttgcggataacaaatacattcatggaacggcatttcaagaat |
120 |
Q |
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|||||| |||||||| ||| ||||| |||||||||||||||| |||||| |||||||| | |||| ||| || ||| || || |||||||| |
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| T |
4904423 |
tatagtgtacaaaggttatctcaaacataatggtgaaaatgagtatccagtagcattggagaggatgacacttagattgggcgattggatgttcaagaag |
4904324 |
T |
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| Q |
121 |
gaaattgaactccattgccagctttatcacccaaatttgatatctttgataggattttgtgaccnnnnnnntgaggaaattctcgtgtataaaaatgatg |
220 |
Q |
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| T |
4904323 |
gtaattgaactccacagccaacttcatcaccctaatttgatatctttaataggattctgcgacgagaaagatgagaaaattatagtgtat------gagt |
4904230 |
T |
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| Q |
221 |
aaatggtcaatggcactctccatgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaagg |
320 |
Q |
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| ||| ||||||| ||||| ||||||||||| |||||| |||| | ||||||||||| ||| |||| |||||||||||||||| ||||| ||| |
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| T |
4904229 |
acatgttcaatggttctctctatgatcacttatgttcaagggatctagaatcactctcatggaagaaaaggcttgaaatatgcattggagttgcaagagg |
4904130 |
T |
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| Q |
321 |
actccactatcttcaccctggaacaaagcg |
350 |
Q |
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||| |||||||||||| | ||| ||||||| |
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| T |
4904129 |
actacactatcttcacaccggagcaaagcg |
4904100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 350
Target Start/End: Original strand, 5822121 - 5822229
Alignment:
| Q |
242 |
atgatcacttaggttcaaaggatatggaatcactctcgtggnnnnnnnggctagaaatatgcattggagctgcaaaaggactccactatcttcaccctgg |
341 |
Q |
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||||||| ||| |||||| | |||||||||||||||| ||| |||| ||||||||||| |||||||| || ||||| ||||| |||||| |||| |
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| T |
5822121 |
atgatcagttacgttcaaggaatatggaatcactctcatggaagaaaaggcttgaaatatgcatcggagctgctaagggactacactaccttcacactgg |
5822220 |
T |
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| Q |
342 |
aacaaagcg |
350 |
Q |
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||||||||| |
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| T |
5822221 |
aacaaagcg |
5822229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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