View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12704_low_5 (Length: 241)
Name: NF12704_low_5
Description: NF12704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12704_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 37577608 - 37577385
Alignment:
| Q |
1 |
cccacttgtttggactcttttgtcgaccttaatttccttttgttttatatttatataaaaatcacgtcatttttgtgctgccacatgtcatttttagaga |
100 |
Q |
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| T |
37577608 |
cccacttgtttggactcttttgtcgaccttaatttccttttgttttatatttatataaaaatcacgtcatttttgtgctgccacatgtcattttcagaga |
37577509 |
T |
|
| Q |
101 |
gccacatgtgaatattgattaaaatctgctgtatcttctttatttggcccttgctagagtatcaatacattcatgctctttcgttgagatggaacatcaa |
200 |
Q |
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| T |
37577508 |
gccacatgtgaatattgattaaaatctgctgtatcttctttatttggcccttgctagagtatcaatacattcatgctctttcgttgagatggaacatcaa |
37577409 |
T |
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| Q |
201 |
aaacattttgattgaccagttaaa |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
37577408 |
aaacattttgattgaccagttaaa |
37577385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 37583602 - 37583391
Alignment:
| Q |
1 |
cccacttgtttggactcttttgtcgaccttaatttccttttgttttat--atttatataaaaatcacgtcatttttgtgctgc-cacatgtcattttt-- |
95 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||| |||||| |||||| | ||||| || |||||||| || |||||||||||||| |
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| T |
37583602 |
cccacttgtttgaactcttttgtcgaccttaatttccatttattttatttatttat-tgaaaattacttcattttttggcccaacacatgtcatttttta |
37583504 |
T |
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| Q |
96 |
agagagccacatgtgaatattgattaaaatctgctgtatcttctttatttggcccttgct----agagtatcaatacattcatgctctttcgttgagatg |
191 |
Q |
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| T |
37583503 |
agagagccacgtgtgaatat--attaaaat--gctgtatctt--ttatttggaccttgcttgctagagtatcaagacattcatgttctttcgttaagatg |
37583410 |
T |
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| Q |
192 |
gaacatcaaaaacattttg |
210 |
Q |
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|||||||||| |||||||| |
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| T |
37583409 |
gaacatcaaatacattttg |
37583391 |
T |
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