View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12705_high_1 (Length: 463)
Name: NF12705_high_1
Description: NF12705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12705_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 23071692 - 23072119
Alignment:
| Q |
18 |
actatggaatacttagcaatattaagaaataggcaggcacacatgcacttacacaaaatttgattgcaagttgcaaccataccatcatctactaaaatcg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
23071692 |
actatggaatacttagcaatattaagaaataggcaggcacacatgcacttacacaaaatttgattgccagttgcaaccataccatcatctactaaaatcg |
23071791 |
T |
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| Q |
118 |
aaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaatataatctcacaccataaaacttaaccacggtctcatatatcaccaaattttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23071792 |
aaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaatataatctcacaccataaaacttaaccacggtctcatatatcaccaaattttc |
23071891 |
T |
|
| Q |
218 |
tagtagagcaaacaaaaagaatgaactaaccatataatatctatnnnnnnnnnccctaataatagcaccatctcaaagattcagaagtaaaaactatata |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23071892 |
cagtagagcaaacaaaaagaatgaactaaccatataatatctataaaaaaaaaccctaataatagcaccatctcaaaggttcagaagtaaaaactatata |
23071991 |
T |
|
| Q |
318 |
tcactgaagatatatagtttccatcatcaaaagctcttccc-ctccttttcctcttctcgaatctcccattctgatttgtatcatggaacctcgtacatt |
416 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| ||| ||||||||||| | ||||||||||||||||||||||||| |||||||||||||| |
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| T |
23071992 |
tcactgaag--atatagtttccatcatcaaaagcccttccctctcattttcctcttcccaaatctcccattctgatttgtatcat-gaacctcgtacatt |
23072088 |
T |
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| Q |
417 |
tcagcagtaacctctcttaaccacaatccag |
447 |
Q |
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| T |
23072089 |
tcagcagtaacctctcttaaccacagtccag |
23072119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 23095897 - 23095967
Alignment:
| Q |
117 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaatataatctcacaccataaaactt |
187 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||| | | || ||||||| ||||||| |
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| T |
23095897 |
gaaacatcaaacttcaaaattgtgacacatttgaaatgcatcattgaacagagtcacacaccaaaaaactt |
23095967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 447
Target Start/End: Original strand, 23096175 - 23096257
Alignment:
| Q |
364 |
tttcctcttctcgaatctcccattctgatttgtatcatggaacctcgtacatttcagcagtaacctctcttaaccacaatccag |
447 |
Q |
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|||||||||| | || ||||||||||||||||||| || |||||| |||||||| || |||| ||||||||||||||||||| |
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| T |
23096175 |
tttcctcttcccagatttcccattctgatttgtatcttg-aacctcatacatttcttcattaacttctcttaaccacaatccag |
23096257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 23127592 - 23127639
Alignment:
| Q |
117 |
gaaatatcaaacttcaaaattgtgacacatttgagttgcatcattgaa |
164 |
Q |
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|||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
23127592 |
gaaacatcaaactttaaaattgtgacacatttgagctgcatcattgaa |
23127639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 447
Target Start/End: Original strand, 23127864 - 23127946
Alignment:
| Q |
364 |
tttcctcttctcgaatctcccattctgatttgtatcatggaacctcgtacatttcagcagtaacctctcttaaccacaatccag |
447 |
Q |
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|||||||||| | ||||| |||||||||||||||||| |||||| |||| |||||||| |||| || |||| ||||||||||| |
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| T |
23127864 |
tttcctcttcgcagatctctcattctgatttgtatcat-gaaccttgtacttttcagcattaacatcacttagccacaatccag |
23127946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 261
Target Start/End: Original strand, 23096065 - 23096099
Alignment:
| Q |
227 |
aaacaaaaagaatgaactaaccatataatatctat |
261 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
23096065 |
aaacaaaaagaatgaactaaccatattatatctat |
23096099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 447
Target Start/End: Original strand, 6963582 - 6963663
Alignment:
| Q |
365 |
ttcctcttctcgaatctcccattctgatttgtatcatggaacctcgtacatttcagcagtaacctctcttaaccacaatccag |
447 |
Q |
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||||||||| | |||||| ||| ||||||| |||| | |||||| |||||||||||| ||||||| |||||||||||||||| |
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| T |
6963582 |
ttcctcttcgcagatctcctattttgatttgcatcaag-aacctcatacatttcagcattaacctcccttaaccacaatccag |
6963663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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