View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12705_high_5 (Length: 305)
Name: NF12705_high_5
Description: NF12705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12705_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 287
Target Start/End: Complemental strand, 44110486 - 44110204
Alignment:
| Q |
4 |
ggaggagcagagaaacaggcgagacagacaaaattttggtggagcccacacttttgtggttctcctcagatttgcgaagaaagaagagagaaagcatcaa |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110486 |
ggaggagcagagaaacaggcgagacagacaaaattttggtggggcccacacttttgtggttctcctcagatttgcgaagaaagaagagagaaagcatcaa |
44110387 |
T |
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| Q |
104 |
catttctatttttcctattctgcccttatctcacagtgccatcacgtcgagaaagcaatatcccatgtataatattattgtgattgagtgagtgctgaaa |
203 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44110386 |
catttctatttttcctatttggcccttatctcacagtgccatcacgttgagaaagcaatatcccatgtataatattattgtgatcgagtgagtgctgaaa |
44110287 |
T |
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| Q |
204 |
ctannnnnnnnnnnaaagaacttaagcttatttatatcttttagtatgttagttttgaatgagttgacgtggaaatattacaaa |
287 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44110286 |
cta-atttttttttaaagaactgaagcttatttatatcttttagtatgttagttttgaatgagttgacgtggaaatattacaaa |
44110204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 6378988 - 6378854
Alignment:
| Q |
4 |
ggaggagcagagaaacaggcgagacagacaaaattttggtggagcccacacttttgtggttctcctcagatttgcgaagaaagaagagagaaagcatcaa |
103 |
Q |
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|||||||||||||||||||| ||| ||||| ||||||| ||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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| T |
6378988 |
ggaggagcagagaaacaggcaagaaagacagaattttgatggggcccacacttttgtagttctccccatatttgcgaagaaagaagagagaaagcatcat |
6378889 |
T |
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| Q |
104 |
catttctatttttcctattctgcccttatctcaca |
138 |
Q |
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|||||| ||||||||||||| ||||| ||||||| |
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| T |
6378888 |
aatttctttttttcctattctacccttctctcaca |
6378854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 6377839 - 6377799
Alignment:
| Q |
244 |
ttagtatgttagttttgaatgagttgacgtggaaatattac |
284 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||| |
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| T |
6377839 |
ttagtatgttggttttgaatgagttgacgtgaaaatattac |
6377799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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