View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12705_low_12 (Length: 209)
Name: NF12705_low_12
Description: NF12705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12705_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 5e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 2187038 - 2187218
Alignment:
| Q |
17 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacctctctgcaactctctcagcaacatcaaccctcccatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2187038 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacctctctgcaactctctcagcaacatcaaccctcccatga |
2187137 |
T |
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| Q |
117 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctaacatccattttcaatgtcaacttctctgcttct |
197 |
Q |
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| T |
2187138 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctaacatccattttcaatgtcaacttctctgcttct |
2187218 |
T |
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Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 36616601 - 36616421
Alignment:
| Q |
17 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacctctctgcaactctctcagcaacatcaaccctcccatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36616601 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacctctctgcaactctctcagcaacatcaaccctcccatga |
36616502 |
T |
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| Q |
117 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctaacatccattttcaatgtcaacttctctgcttct |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36616501 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctgacatccattttcaatgtcaacttctctgcttct |
36616421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 36650355 - 36650175
Alignment:
| Q |
17 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacctctctgcaactctctcagcaacatcaaccctcccatga |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
36650355 |
acatcatgtatattgaattcaaattgaggatgcaacaacactcagctctgtcccataaaacttctctgcaactctctcagcaacatcaaccctcccatga |
36650256 |
T |
|
| Q |
117 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctaacatccattttcaatgtcaacttctctgcttct |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36650255 |
gttttacaagctccaaacaaagcacccaccaaagcttcatcaggcctaacatccattttcaatgtcaacttctctgcttct |
36650175 |
T |
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