View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12705_low_6 (Length: 317)
Name: NF12705_low_6
Description: NF12705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12705_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 2409548 - 2409271
Alignment:
| Q |
19 |
catttgtcttttttcttactattgccaagttgtccgtgaatttaaatttaaactaacatggtcaccgaaagtaataatctnnnnnnngttaacaaactta |
118 |
Q |
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| T |
2409548 |
catttgtcttttttcttactattgccaagttgtccgtgaatttaaatttaaactaacatggtcaccgaaagtaataatctaaaaaaagttaacaaactta |
2409449 |
T |
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| Q |
119 |
tgtgggataaattagttgaggtgtaatcattttggaagcatttggattcttattttacaatggatggatgtttcttcaatgactccctttcagttgtatg |
218 |
Q |
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| T |
2409448 |
tgtgggataaattagttgaggtgtaatcattttggaagcatttggattcttattttacaatggatggatgtttcttcaatgactccctttcagttgtatg |
2409349 |
T |
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| Q |
219 |
attttaattactctccattttagtttgttgtgttgcttcataagaagattaaggaacaccatgcatgttatttggttagttt |
300 |
Q |
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| T |
2409348 |
att----ttactctccattttagtttgttgtgttgcttcataagaagattaaggaacaccatgcatgttatttggttagttt |
2409271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 134 - 296
Target Start/End: Complemental strand, 36908435 - 36908277
Alignment:
| Q |
134 |
ttgaggtgtaatcattttggaagcatttggattcttattttacaatggatggatgtttcttcaatgactccctttcagttgtatgattttaattactctc |
233 |
Q |
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||||||||||||||||||| || |||||| |||||||| || |||||||||| |||||||| ||||||||||||| || | ||||| |||||||| |
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| T |
36908435 |
ttgaggtgtaatcattttgaaaacatttgaattcttatattgcaatggatgggcgtttcttccgtgactccctttcaattatttgatt----ttactctc |
36908340 |
T |
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| Q |
234 |
cattttagtttgttgtgttgcttcataagaagattaaggaacaccatgcatgttatttggtta |
296 |
Q |
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| T |
36908339 |
cattttagttcgttgtgtggcttaacaagaagattgaggaacatcatgcatattgtttggtta |
36908277 |
T |
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