View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12706_high_1 (Length: 304)

Name: NF12706_high_1
Description: NF12706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12706_high_1
NF12706_high_1
[»] chr4 (4 HSPs)
chr4 (160-285)||(48704982-48705107)
chr4 (78-137)||(45364695-45364754)
chr4 (78-137)||(45375935-45375994)
chr4 (78-137)||(45383514-45383573)
[»] chr3 (3 HSPs)
chr3 (208-284)||(42661975-42662051)
chr3 (208-284)||(50230411-50230487)
chr3 (208-278)||(42660374-42660444)
[»] chr7 (1 HSPs)
chr7 (205-281)||(9209931-9210007)


Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 48705107 - 48704982
Alignment:
Q  160 gctatataacgataaaccaatgtggacaaggttgtggaggagattaaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48705107 gctatataacgataaaccaatgtggacaaggttgtggaggagattaaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgt 48705008  T
Q  260 tttatgagtggcaatggaatcctatt 285  Q
    ||||||||||||||||||||||||||    
T  48705007 tttatgagtggcaatggaatcctatt 48704982  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 45364754 - 45364695
Alignment:
Q  78 tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt 137  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || ||||||    
T  45364754 tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt 45364695  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 45375994 - 45375935
Alignment:
Q  78 tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt 137  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || ||||||    
T  45375994 tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt 45375935  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 45383573 - 45383514
Alignment:
Q  78 tggtatatcttcttttgaaatgggaatttcttttgcctcccaataattaggatcctgttt 137  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||| ||| || ||||||    
T  45383573 tggtatatcttcttttgaagtggaaatttctttggcctcctaataactagcatactgttt 45383514  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 42662051 - 42661975
Alignment:
Q  208 gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcctat 284  Q
    ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||||||||||||||||| |||||    
T  42662051 gttatgtcgtggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaaccctat 42661975  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 208 - 284
Target Start/End: Original strand, 50230411 - 50230487
Alignment:
Q  208 gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcctat 284  Q
    ||||||||||||||||||||||||||||| ||| ||||| | ||||||||||| ||||||||||||||||| |||||    
T  50230411 gttatgtcgtggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaaccctat 50230487  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 42660374 - 42660444
Alignment:
Q  208 gttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaa 278  Q
    |||||||| |||||||||||||||||||| ||| ||||| | ||||||||||| |||||||||||||||||    
T  42660374 gttatgtcctggagatgggggttaagtcgattgcaaacgtctgcttgcttgttctatgagtggcaatggaa 42660444  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 9210007 - 9209931
Alignment:
Q  205 aaggttatgtcgtggagatgggggttaagtcggttggaaacgacggcttgcttgttttatgagtggcaatggaatcc 281  Q
    |||||| |||||||||||||| | |||||||||||| ||  | |||| || ||||| ||||||||||| ||||||||    
T  9210007 aaggttctgtcgtggagatggtgtttaagtcggttgcaagggccggcgtggttgttctatgagtggcactggaatcc 9209931  T

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