View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12706_high_2 (Length: 236)

Name: NF12706_high_2
Description: NF12706
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12706_high_2
NF12706_high_2
[»] chr4 (40 HSPs)
chr4 (1-219)||(24477460-24477678)
chr4 (42-215)||(24421231-24421404)
chr4 (55-209)||(24470524-24470678)
chr4 (42-215)||(24470319-24470492)
chr4 (43-176)||(24477407-24477540)
chr4 (130-218)||(24421324-24421412)
chr4 (130-218)||(24470311-24470399)
chr4 (130-218)||(24470503-24470591)
chr4 (61-219)||(24470626-24470784)
chr4 (42-218)||(24420604-24420780)
chr4 (42-215)||(24470703-24470875)
chr4 (42-218)||(24470847-24471022)
chr4 (112-219)||(24421179-24421286)
chr4 (109-219)||(24477604-24477714)
chr4 (55-215)||(24420895-24421055)
chr4 (129-219)||(24421371-24421461)
chr4 (129-219)||(24470262-24470352)
chr4 (130-215)||(24420559-24420644)
chr4 (102-219)||(24420939-24421056)
chr4 (61-181)||(24421169-24421289)
chr4 (112-219)||(24470437-24470544)
chr4 (52-209)||(24420805-24420962)
chr4 (68-213)||(24421089-24421234)
chr4 (82-215)||(24470695-24470828)
chr4 (55-194)||(24420724-24420863)
chr4 (109-200)||(24476978-24477069)
chr4 (130-215)||(24470982-24471067)
chr4 (58-218)||(24420508-24420668)
chr4 (79-215)||(24420751-24420887)
chr4 (79-219)||(24470836-24470975)
chr4 (129-181)||(24482195-24482247)
chr4 (68-215)||(24420847-24420994)
chr4 (68-219)||(24470489-24470640)
chr4 (61-216)||(24470961-24471116)
chr4 (172-215)||(24477011-24477054)
chr4 (73-215)||(24477197-24477339)
chr4 (82-219)||(24420651-24420788)
chr4 (130-215)||(24421039-24421124)
chr4 (154-215)||(24481499-24481559)
chr4 (43-219)||(24421275-24421451)
[»] scaffold0879 (7 HSPs)
scaffold0879 (103-215)||(4431-4543)
scaffold0879 (112-219)||(4488-4595)
scaffold0879 (61-181)||(4485-4605)
scaffold0879 (102-219)||(4718-4835)
scaffold0879 (55-213)||(4527-4685)
scaffold0879 (55-200)||(4719-4864)
scaffold0879 (130-215)||(4650-4735)
[»] chr2 (8 HSPs)
chr2 (68-181)||(41899954-41900067)
chr2 (73-176)||(41900295-41900398)
chr2 (129-219)||(41900540-41900630)
chr2 (130-219)||(41900348-41900437)
chr2 (163-219)||(41900012-41900068)
chr2 (136-213)||(41899826-41899903)
chr2 (130-219)||(41900156-41900245)
chr2 (130-219)||(41900300-41900389)
[»] chr1 (9 HSPs)
chr1 (130-200)||(11879451-11879521)
chr1 (130-200)||(11902047-11902117)
chr1 (130-200)||(11902095-11902165)
chr1 (130-181)||(11879499-11879550)
chr1 (133-176)||(11879694-11879737)
chr1 (68-161)||(11879533-11879626)
chr1 (130-179)||(52821380-52821429)
chr1 (130-214)||(11901930-11902014)
chr1 (133-209)||(52821302-52821378)
[»] scaffold1918 (2 HSPs)
scaffold1918 (129-164)||(16-51)
scaffold1918 (133-214)||(425-506)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 24477678 - 24477460
Alignment:
Q  1 ccctcaccaccttctccatatgtttacaagtnnnnnnnnnntccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctt 100  Q
    |||||||||||| |||||||||| |||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24477678 ccctcaccacctcctccatatgtgtacaagtccccaccacctccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctt 24477579  T
Q  101 tccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24477578 tccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacc 24477479  T
Q  201 tcccccaccatatgtctac 219  Q
    |||||||||||||||||||    
T  24477478 tcccccaccatatgtctac 24477460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 215
Target Start/End: Complemental strand, 24421404 - 24421231
Alignment:
Q  42 tccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccacca 141  Q
    |||||||| ||||||||| |||||| |||||||||| |||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||     
T  24421404 tccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccc 24421305  T
Q  142 tctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    ||||| ||||| ||||||||||||||||||||||| || | ||| ||||| || |||||||||||||| |||||    
T  24421304 tctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgt 24421231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 24470524 - 24470678
Alignment:
Q  55 cctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctc 154  Q
    ||||| |||||| |||||||||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||||| ||||| |    
T  24470524 cctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccac 24470623  T
Q  155 cacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccacc 209  Q
    |||||||||||||||||||||| || | ||| ||||| ||||| |||||||||||    
T  24470624 cacctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccacc 24470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 24470319 - 24470492
Alignment:
Q  42 tccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccacca 141  Q
    |||||||| ||||||||| |||||| |||||||||| |||||||||||||| || ||||  ||||||||||||||||||||||||||||||||||||||     
T  24470319 tccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtctataagagtccaccaccaccc 24470418  T
Q  142 tctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    ||||| ||||| ||||||||||||||||||||||| || | ||| ||| | || ||||||||||| || |||||    
T  24470419 tctccatcaccaccacctccatatgtctacaagtctcctcctccaccaacaccctcacctcccccgccctatgt 24470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 176
Target Start/End: Complemental strand, 24477540 - 24477407
Alignment:
Q  43 ccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccat 142  Q
    ||||||| ||| ||||| |||||| |||||||||| |||||||||||||| |||||||  |||||||||||||||||||| |||||||| || | ||| |    
T  24477540 ccatctccctcacctccacctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtctacaagagtcctcctctacctt 24477441  T
Q  143 ctccctcacctccacctccatatgtctacaagtc 176  Q
    |||| ||||| |||||||||||||||||||||||    
T  24477440 ctccatcaccaccacctccatatgtctacaagtc 24477407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 24421412 - 24421324
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24421412 ccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 24421324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 24470311 - 24470399
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    |||||||| ||||||||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  24470311 ccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccatcaccttcacctcccccaccatatgtcta 24470399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 24470503 - 24470591
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    |||||||| || || || |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24470503 ccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgtcta 24470591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 24470626 - 24470784
Alignment:
Q  61 cctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctc 160  Q
    |||||| |||||||||| || || ||||| || || ||||  ||||||||||| ||| | ||||||   |||||||| |||||||| |||||||| ||||    
T  24470626 cctccatatgtctacaagtctcctcctccaccatcaccttctcctcccccaccctatatttataagtcgccaccacctccatctccttcacctcctcctc 24470725  T
Q  161 catatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    ||||||||||||||||||||| ||| ||||| || || || || |||||||||||||||    
T  24470726 catatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctac 24470784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 24420780 - 24420604
Alignment:
Q  42 tccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccacca 141  Q
    |||||||| ||||||||| || ||| |||| ||||| ||||||||||| |||||||| | ||| || || ||||| || |||||   ||| || ||||||    
T  24420780 tccatctccctctcctcccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctcctccacca 24420681  T
Q  142 tctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    ||||| ||||| || ||||||||| |||||||||||||||  || ||||| |||||||| || || |||||||||||    
T  24420680 tctccttcaccaccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtcta 24420604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 215
Target Start/End: Original strand, 24470703 - 24470875
Alignment:
Q  42 tccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccacca 141  Q
    ||||||||  || ||||| |||||| |||||||||| ||||||||||| || || || |  || || |||||||||||||| ||   |||||| ||||||    
T  24470703 tccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccacccccacca 24470802  T
Q  142 tctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    || || ||||| || || |||||||| || |||||||||| |||||||||||| || ||| |||||||||||||    
T  24470803 tcaccttcaccccctccaccatatgtatataagtcaccacctcctccatctccctctcct-ccccaccatatgt 24470875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 24470847 - 24471022
Alignment:
Q  42 tccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccacca 141  Q
    |||||||| ||||||||| || ||| |||| ||||| ||||||||||| |||||||| | ||| || || ||||| || ||||||   || || ||| ||    
T  24470847 tccatctccctctcctcc-ccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcacctcctccagca 24470945  T
Q  142 tctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    ||||| ||||| || ||||||||| |||||||||||||||  || ||||| |||||||| ||||| ||||| |||||    
T  24470946 tctccttcaccacctcctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtcta 24471022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 112 - 219
Target Start/End: Complemental strand, 24421286 - 24421179
Alignment:
Q  112 ccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccat 211  Q
    ||||||||||| |||  ||| || |||||||| ||||||||||| || || ||||| |||||||||||||  |||||||| ||||||||||| || ||||    
T  24421286 ccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctccat 24421187  T
Q  212 atgtctac 219  Q
    ||||||||    
T  24421186 atgtctac 24421179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 24477714 - 24477604
Alignment:
Q  109 ccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccac 208  Q
    ||||| ||||||||||||  ||| |||||||||||||||||||| || ||||||||||| |||||||| ||||  ||||||||||  || ||||| || |    
T  24477714 ccaccttatgtctataagtctcctccaccaccatctccctcaccacctcctccatatgtgtacaagtccccaccacctccatctctctctcctccgcctc 24477615  T
Q  209 catatgtctac 219  Q
    || ||||||||    
T  24477614 cacatgtctac 24477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 24421055 - 24420895
Alignment:
Q  55 cctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctc 154  Q
    ||||| || ||| |||| || ||||||||||| || || ||||| | ||| || |||||||||||||| |||   ||||| |||||||| || || || |    
T  24421055 cctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccac 24420956  T
Q  155 cacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    ||||||||||||||||||| || ||||  || ||||| |||||||| || |||||||||||    
T  24420955 cacctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgt 24420895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 24421461 - 24421371
Alignment:
Q  129 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||| ||||||||||||||||| || ||||| ||||| |||||||| ||||  ||||||||||| || ||||| || ||||||||||||    
T  24421461 tccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctac 24421371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 24470262 - 24470352
Alignment:
Q  129 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||| ||||||||||||||||| || ||||| ||||| |||||||| ||||  ||||||||||| || ||||| || ||||||||||||    
T  24470262 tccacctccaccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctac 24470352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 24420644 - 24420559
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||||||||||||| || ||||| ||||||||||||||||| ||||| || | |||||| ||||||||||| || || ||||||||    
T  24420644 ccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcaccccctcctccatatgt 24420559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 24421056 - 24420939
Alignment:
Q  102 ccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacct 201  Q
    |||||||||||||||||| |||||    |||||||| |||||||| || || || || |||||||||||||||||||||| ||| ||||| || || ||     
T  24421056 ccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctcca 24420957  T
Q  202 cccccaccatatgtctac 219  Q
    || || ||||||||||||    
T  24420956 ccacctccatatgtctac 24420939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 181
Target Start/End: Complemental strand, 24421289 - 24421169
Alignment:
Q  61 cctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctc 160  Q
    |||||| |||||||||| || || ||||| || || || |  ||||||||||| ||||| || |||   |||||||| ||||| || |||||||| ||||    
T  24421289 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccttatgtttacaagtcaccaccacctccatccccttcacctcctcctc 24421190  T
Q  161 catatgtctacaagtcaccac 181  Q
    |||||||||||||||||||||    
T  24421189 catatgtctacaagtcaccac 24421169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 24470437 - 24470544
Alignment:
Q  112 ccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccat 211  Q
    ||||||||||| |||  ||| || |||||| | ||||||||||| || || ||||| |||||||||||||  ||||| || ||||||||||| || ||||    
T  24470437 ccatatgtctacaagtctcctcctccaccaacaccctcacctcccccgccctatgtttacaagtcaccaccacctccttccccttcacctcctcctccat 24470536  T
Q  212 atgtctac 219  Q
    ||||||||    
T  24470537 atgtctac 24470544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 24420962 - 24420805
Alignment:
Q  52 tctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcac 151  Q
    ||||| || |||||| ||||||||||||| ||||| || || || ||||  || || ||||||||||| ||||||   |||||||| || || || || |    
T  24420962 tctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgtatataagtcaccaccacctccttccccttccc 24420863  T
Q  152 ctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccacc 209  Q
    |||| ||||||||||| |||||||| ||||  || ||||| ||||| ||||| |||||    
T  24420862 ctcctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctccacc 24420805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 24421234 - 24421089
Alignment:
Q  68 atgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgt 167  Q
    |||| ||||| |||||||| ||||| || ||||  ||||| || ||||||||||| |||   |||||||||||||| || || || |||||||||||| |    
T  24421234 atgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccaccacctccatatat 24421135  T
Q  168 ctacaagtcaccacgtcctccatctccttcacctcccccaccatat 213  Q
     |||||||| ||||  || ||||| || ||||| || |||||||||    
T  24421134 ttacaagtccccaccaccaccatccccatcaccccctccaccatat 24421089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 24470695 - 24470828
Alignment:
Q  82 ccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccac 181  Q
    ||||| ||||| |||||||  ||||| || ||||||||||| |||   ||||| |||||||| || || || ||||| |||||||||||||| || ||||    
T  24470695 ccaccacctccatctccttcacctcctcctccatatgtctacaagtcaccacctccaccatccccatctccaccaccaccatatgtctacaaatctccac 24470794  T
Q  182 gtcctccatctccttcacctcccccaccatatgt 215  Q
      || ||||| |||||||| || |||||||||||    
T  24470795 ccccaccatcaccttcaccccctccaccatatgt 24470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 194
Target Start/End: Complemental strand, 24420863 - 24420724
Alignment:
Q  55 cctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctc 154  Q
    ||||| |||||| |||| ||||| || ||||| || || || ||||  ||||| ||||| ||| | ||||||   |||||||| ||||||||||| ||||    
T  24420863 cctcctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgccaccacctccatctccctctcctc 24420764  T
Q  155 cacctccatatgtctacaagtcaccacgtcctccatctcc 194  Q
    | || |||||||| ||||||||||||| ||| || |||||    
T  24420763 ccccaccatatgtttacaagtcaccacctccaccgtctcc 24420724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 24477069 - 24476978
Alignment:
Q  109 ccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    ||||||||| | ||||||   ||||| || ||||||||||| ||||| || |||||||| ||||||||||||| ||| |||||| |||||||    
T  24477069 ccaccatatctatataagtcaccacctcctccatctccctctcctcccccaccatatgtatacaagtcaccacctccaccatctacttcacc 24476978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 24470982 - 24471067
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||||||||||||| || ||||| || |||||||| ||||| ||||| || | |||||| ||||||||||| || || ||||||||    
T  24470982 ccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctccttcaccccctcctccatatgt 24471067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 24420668 - 24420508
Alignment:
Q  58 ccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccac 157  Q
    ||||||||| || ||||||| |||||||| || || || ||||  || || || |||||||||||||||   || || || || ||||| ||||| || |    
T  24420668 ccgcctccatatatctacaagtcaccaccaccaccatccccttcaccaccacctccatatgtctataagtcccctcctcctccttctccttcaccccctc 24420569  T
Q  158 ctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtcta 218  Q
    |||||||||| ||||| || || |  || |||||||||||||| || ||||| ||||||||    
T  24420568 ctccatatgtttacaaatctcctcccccaccatctccttcaccccctccaccctatgtcta 24420508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 24420887 - 24420751
Alignment:
Q  79 tcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcac 178  Q
    |||||||| ||||| || |||| |||||| || |||||||| || |||   ||||| |||||||| || || ||||| || || ||| | || ||||| |    
T  24420887 tcaccaccacctccttccccttcccctcctcctccatatgtttacaagtccccacccccaccatcaccttctcctcctccaccctatatttataagtcgc 24420788  T
Q  179 cacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||  ||||||||||| || |||||||||||||||||    
T  24420787 caccacctccatctccctctcctcccccaccatatgt 24420751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 24470836 - 24470975
Alignment:
Q  79 tcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcac 178  Q
    |||||||||||||| ||||| |  ||||||| ||||||||| || |||   ||||| ||||| ||||| || || ||||||||||| || || |||||||    
T  24470836 tcaccacctcctccatctccctctcctcccc-accatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataagtcac 24470934  T
Q  179 cacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    | | |||  ||||||||||||| || || |||||| |||||    
T  24470935 ctcctccagcatctccttcaccacctcctccatatatctac 24470975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 24482247 - 24482195
Alignment:
Q  129 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccac 181  Q
    |||||||||||||||||| ||||| |||||||| |||||||| || |||||||    
T  24482247 tccaccaccaccatctccatcaccaccacctccttatgtctataaatcaccac 24482195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 215
Target Start/End: Complemental strand, 24420994 - 24420847
Alignment:
Q  68 atgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgt 167  Q
    |||||||||| ||||||||||| || || || |  || || || ||||||||||| ||   |||||| |||||||| || ||||| || || ||||||||    
T  24420994 atgtctacaagtcaccacctccaccatccccatctccaccacctccatatgtctacaaatctccacccccaccatcaccttcaccccctccaccatatgt 24420895  T
Q  168 ctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
     || ||||||||||  ||||| || ||||| ||||| || ||||||||    
T  24420894 atataagtcaccaccacctccttccccttcccctcctcctccatatgt 24420847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 219
Target Start/End: Original strand, 24470489 - 24470640
Alignment:
Q  68 atgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgt 167  Q
    |||| ||||| |||||||| ||||| || ||||  ||||| || ||||||||||| |||   ||||| || |||||||| |||||||| || ||||||||    
T  24470489 atgtttacaagtcaccaccacctccttccccttcacctcctcctccatatgtctacaagtcaccacctcctccatctccttcacctcccccaccatatgt 24470588  T
Q  168 ctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    ||| |||   ||||  || || ||||| ||||| || || ||||||||||||    
T  24470589 ctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24470640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 216
Target Start/End: Original strand, 24470961 - 24471116
Alignment:
Q  61 cctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctc 160  Q
    |||||| || ||||||| |||||||| || || || ||||  || ||||| ||||| |||||||||   || || || || ||||| ||||| || ||||    
T  24470961 cctccatatatctacaagtcaccaccaccaccatccccttcaccaccccctccatacgtctataagtcccctcctcctccttctccttcaccccctcctc 24471060  T
Q  161 catatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtc 216  Q
    ||||||| ||||| || || |  || ||||||||||||||||| ||||| ||||||    
T  24471061 catatgtttacaaatctcctcccccaccatctccttcacctcctccaccctatgtc 24471116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 24477054 - 24477011
Alignment:
Q  172 aagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||||||||| |||||||||||| || |||||||||||||||||    
T  24477054 aagtcaccacctcctccatctccctctcctcccccaccatatgt 24477011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 215
Target Start/End: Complemental strand, 24477339 - 24477197
Alignment:
Q  73 tacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctaca 172  Q
    |||||||||||||| ||||| || |||| ||||||  |||| |||||||| |||   ||||||||||| || | |||||| || || |||||||| || |    
T  24477339 tacaaatcaccaccacctccatccccttcccctccttcaccttatgtctacaagtccccaccaccaccgtcacactcaccccctccaccatatgtatata 24477240  T
Q  173 agtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||| |  | ||| ||||| || || ||||||||||| |||||    
T  24477239 agtctcttcctccaccatcaccctctcctcccccaccgtatgt 24477197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 24420788 - 24420651
Alignment:
Q  82 ccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccac 181  Q
    ||||| ||||| ||||| |  ||||||||||||||||| || |||   ||||| ||||| ||||| || || ||||||||||| || || || || || |    
T  24420788 ccaccacctccatctccctctcctcccccaccatatgtttacaagtcaccacctccaccgtctccatccccaccacctccatacgtttataaatctcctc 24420689  T
Q  182 gtcctccatctccttcacctcccccaccatatgtctac 219  Q
     ||| |||||||||||||| || || |||||| |||||    
T  24420688 ctccaccatctccttcaccaccgcctccatatatctac 24420651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Complemental strand, 24421124 - 24421039
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||||||||||||| || ||||| || || |||||| | |||||||| || | ||| ||||| || || |||||||||||||||||    
T  24421124 ccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctccaccatcaccctcccctcccccaccatatgt 24421039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 24481559 - 24481499
Alignment:
Q  154 ccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    ||||||||||||||||||||||| || | ||| |||||||| |||||  |||||||||||||    
T  24481559 ccacctccatatgtctacaagtctcctcctccaccatctccatcacc-accccaccatatgt 24481499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 24421451 - 24421275
Alignment:
Q  43 ccatctctctctcctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccat 142  Q
    ||||||| ||| || || |||||  |||| ||||| || ||||| ||||| ||||| |  ||||| || ||||||||||| |||   ||||| || ||||    
T  24421451 ccatctccctcaccacctcctccgtatgtgtacaagtccccaccacctccatctccctctcctcctcctccatatgtctacaagtcaccacctcctccat 24421352  T
Q  143 ctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||| |||||||| || ||||||||||| |||   ||||  || || ||||| ||||| || || ||||||||||||    
T  24421351 ctccttcacctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctac 24421275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 77; Significance: 7e-36; HSPs: 7)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 103 - 215
Target Start/End: Original strand, 4431 - 4543
Alignment:
Q  103 cctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctc 202  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| || | ||| ||||| || |||||||    
T  4431 cctcccccaccatatgtctataagagtccaccaccaccctctccatcaccaccacctccatatgtctacaagtctcctcctccaccatcaccctcacctc 4530  T
Q  203 ccccaccatatgt 215  Q
    |||||||||||||    
T  4531 ccccaccatatgt 4543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 4488 - 4595
Alignment:
Q  112 ccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccat 211  Q
    ||||||||||| |||  ||| || |||||||| ||||||||||| || |||||||| |||||||||||||  |||||||| ||||||||||| || ||||    
T  4488 ccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccat 4587  T
Q  212 atgtctac 219  Q
    ||||||||    
T  4588 atgtctac 4595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 181
Target Start/End: Original strand, 4485 - 4605
Alignment:
Q  61 cctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctc 160  Q
    |||||| |||||||||| || || ||||| || || || |  ||||||||||||||||| || |||   |||||||| ||||| || |||||||| ||||    
T  4485 cctccatatgtctacaagtctcctcctccaccatcaccctcacctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctc 4584  T
Q  161 catatgtctacaagtcaccac 181  Q
    |||||||||||||||||||||    
T  4585 catatgtctacaagtcaccac 4605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 4718 - 4835
Alignment:
Q  102 ccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacct 201  Q
    |||||||||||||||||| |||||    |||||||| |||||||| || || || || |||||||||||||||||||||| ||| ||||| || || ||     
T  4718 ccctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctcca 4817  T
Q  202 cccccaccatatgtctac 219  Q
    || || ||||||||||||    
T  4818 ccacctccatatgtctac 4835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 213
Target Start/End: Original strand, 4527 - 4685
Alignment:
Q  55 cctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctc 154  Q
    ||||| || ||| |||| ||||| |||||||| ||||| || ||||  ||||| || ||||||||||| |||   |||||||||||||| || || || |    
T  4527 cctcccccaccatatgtttacaagtcaccaccacctccatccccttcacctcctcctccatatgtctacaagtcaccaccaccaccatccccatctccac 4626  T
Q  155 cacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatat 213  Q
    ||||||||||| | |||||||| ||||  || ||||| || ||||| || |||||||||    
T  4627 cacctccatatatttacaagtccccaccaccaccatccccatcaccccctccaccatat 4685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 200
Target Start/End: Original strand, 4719 - 4864
Alignment:
Q  55 cctccgcctccacatgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctc 154  Q
    ||||| || ||| |||| || ||||||||||| || || ||||| | ||| || |||||||||||||| |||   ||||| |||||||| || || || |    
T  4719 cctcccccaccatatgtatataaatcaccaccacccccatctccatccccccctccaccatatgtctacaagtcaccacctccaccatccccatctccac 4818  T
Q  155 cacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    ||||||||||||||||||| || ||||  || ||||| ||||||||    
T  4819 cacctccatatgtctacaaatctccacccccaccatcaccttcacc 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 4650 - 4735
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgt 215  Q
    |||||||||||||| || ||||| || || |||||| | |||||||| || | ||| ||||| || || |||||||||||||||||    
T  4650 ccaccaccaccatccccatcaccccctccaccatatatatacaagtctcctcctccaccatcaccctcccctcccccaccatatgt 4735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 41900067 - 41899954
Alignment:
Q  68 atgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgt 167  Q
    |||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| |||   ||||||||||| || |||||||| || |||||||||||    
T  41900067 atgtctacaactctccacctcctccctctccttcacctccaccaccatatgtctacaagtccccaccaccaccttccccctcaccacctcctccatatgt 41899968  T
Q  168 ctacaagtcaccac 181  Q
     |||||||| ||||    
T  41899967 ttacaagtccccac 41899954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 41900398 - 41900295
Alignment:
Q  73 tacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctccatatgtctaca 172  Q
    ||||| |||||||| ||||| |||||||  | ||| |||||||||||||| ||   ||| ||||| || ||||| ||||| |||||||||||||||||||    
T  41900398 tacaagtcaccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctaca 41900299  T
Q  173 agtc 176  Q
    ||||    
T  41900298 agtc 41900295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 129 - 219
Target Start/End: Complemental strand, 41900630 - 41900540
Alignment:
Q  129 tccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||||||||||||||| ||||| || || || ||| | || ||||||||||  ||||| |||||||||||||| || ||||||||||||    
T  41900630 tccaccaccaccatctccttcaccacctccaccttatatttataagtcaccaccacctccctctccttcacctcctccgccatatgtctac 41900540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 41900437 - 41900348
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||||||||||| || ||||| || || || ||| | |||||||||||||  ||||| |||||||||| ||| |||||||||||||||    
T  41900437 ccaccaccaccatccccatcaccacctccaccttatatttacaagtcaccaccacctccttctccttcacttcctccaccatatgtctac 41900348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 41900068 - 41900012
Alignment:
Q  163 tatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    ||||||||||| || |||| |||||| |||||||||||||| |||||||||||||||    
T  41900068 tatgtctacaactctccacctcctccctctccttcacctccaccaccatatgtctac 41900012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 41899903 - 41899826
Alignment:
Q  136 ccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatat 213  Q
    |||||||| || ||||| || ||||||||||| |||||||| |||| ||| || ||| |||||||||| |||||||||    
T  41899903 ccaccatcaccttcaccgcctcctccatatgtttacaagtctccacctccaccttcttcttcacctcctccaccatat 41899826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 41900245 - 41900156
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||||||||||| || ||||| || || || |||||  ||||||||||||  | ||| ||||| |||||||| ||||| |||||||||    
T  41900245 ccaccaccaccatccccatcaccacctccgccttatgtgcacaagtcaccaccacatccttctccctcacctcctccaccgtatgtctac 41900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 41900389 - 41900300
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatgtctac 219  Q
    |||||||| || ||||| |||| ||| || |||||||||||||| || || |  ||||| ||||||||||| || || ||||||||||||    
T  41900389 ccaccacctccttctccttcacttcctccaccatatgtctacaaatctcctccacctccctctccttcaccaccacctccatatgtctac 41900300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 11879451 - 11879521
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    |||||||||||| |||| ||||| |||||||| ||||| |||||||||||||  || ||||||||||||||    
T  11879451 ccaccaccaccaactccttcaccaccacctccttatgtgtacaagtcaccaccaccgccatctccttcacc 11879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 11902047 - 11902117
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    |||||||||||| || | ||||| |||||||| ||||| |||||||||||||  || ||||||||||||||    
T  11902047 ccaccaccaccaacttcttcaccaccacctccttatgtatacaagtcaccaccaccaccatctccttcacc 11902117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 11902095 - 11902165
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacc 200  Q
    ||||||||||||||||| |||||  ||||||| ||||| |||||||||||||  |||||||| || |||||    
T  11902095 ccaccaccaccatctccttcaccgtcacctccttatgtgtacaagtcaccaccacctccatccccatcacc 11902165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 11879499 - 11879550
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccac 181  Q
    |||||||| |||||||| ||||| |||||||| ||||| |||||||||||||    
T  11879499 ccaccaccgccatctccttcaccaccacctccttatgtgtacaagtcaccac 11879550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 11879694 - 11879737
Alignment:
Q  133 ccaccaccatctccctcacctccacctccatatgtctacaagtc 176  Q
    |||||||||||||||||||||||||| ||||||  |||||||||    
T  11879694 ccaccaccatctccctcacctccaccaccatattactacaagtc 11879737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 161
Target Start/End: Original strand, 11879533 - 11879626
Alignment:
Q  68 atgtctacaaatcaccacctcctccgtctcctttccctcccccaccatatgtctataagagtccaccaccaccatctccctcacctccacctcc 161  Q
    |||| ||||| |||||||| || || || |||| ||| || ||||||||   ||| |||||||| |||||||| ||||| ||||||||||||||    
T  11879533 atgtgtacaagtcaccaccaccaccctcaccttccccaccaccaccatactactacaagagtcctccaccaccttctccttcacctccacctcc 11879626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 52821429 - 52821380
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcacc 179  Q
    ||||||||||| |||||||||||||||||||| ||   ||||||||||||    
T  52821429 ccaccaccaccctctccctcacctccacctccttactactacaagtcacc 52821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 214
Target Start/End: Original strand, 11901930 - 11902014
Alignment:
Q  130 ccaccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatg 214  Q
    |||||||| || ||||||||||| || ||||| ||||| || |||||||||| ||| |||||  | ||||| || ||||||||||    
T  11901930 ccaccaccgccgtctccctcaccacctcctccttatgtgtataagtcaccacctcccccatcctcgtcacccccaccaccatatg 11902014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 52821378 - 52821302
Alignment:
Q  133 ccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccacc 209  Q
    |||||||| |||||||||||||||||||| ||   |||||||||||| |  || || || ||||||||||| |||||    
T  52821378 ccaccaccctctccctcacctccacctccttactactacaagtcacctccaccaccttcaccttcacctcctccacc 52821302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold1918
Description:

Target: scaffold1918; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 51 - 16
Alignment:
Q  129 tccaccaccaccatctccctcacctccacctccata 164  Q
    ||||||||||||||||||||||||||||||||||||    
T  51 tccaccaccaccatctccctcacctccacctccata 16  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1918; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 506 - 425
Alignment:
Q  133 ccaccaccatctccctcacctccacctccatatgtctacaagtcaccacgtcctccatctccttcacctcccccaccatatg 214  Q
    ||||| ||||| || ||||||||||| || ||  | |||||||||||||  |||||||| || |||||||| ||||||||||    
T  506 ccacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctccatcaccgtcacctccaccaccatatg 425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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