View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12707_low_1 (Length: 574)
Name: NF12707_low_1
Description: NF12707
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12707_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 539; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 18 - 568
Target Start/End: Complemental strand, 34771406 - 34770856
Alignment:
| Q |
18 |
acatgaaactaacctttacatggcttggttttgttgtggtaaagatcaattagagacacgaaaactagatagaagtaggaagcgagattctctctctttc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
34771406 |
acatgaaactaacctttacatggcttggttttgttgtggtaaagatcaattagagacacgaaaactagagagaagtaggaagcgagattctctttctttc |
34771307 |
T |
|
| Q |
118 |
attttctaatggtattagagaaacaaaagtaaataaataatgaatgaatgctactttattaaaaagaaatagccaatgctacttatttggcctaaagaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771306 |
attttctaatggtattagagaaacaaaagtaaataaataatgaatgaatgctactttattaaaaagaaatagccaatgctacttatttggcctaaagaag |
34771207 |
T |
|
| Q |
218 |
tttagatgaatcggatttcgcaacttaatagaattagagttacttctgagactctctaaagatgtattttcgttggcaatagtagttgaatttttagtta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771206 |
tttagatgaatcggatttcgcaacttaatagaattagagttacttctgagactctctaaagatgtattttcgttggcaatagtagttgaatttttagtta |
34771107 |
T |
|
| Q |
318 |
ttttttatcaattgattcaaacttcgttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34771106 |
ttttttatcaattgattcaaacttcgttagctctttttattattgttattatagataagatcacagtagttattgataagttaggattttgtaaaaattg |
34771007 |
T |
|
| Q |
418 |
aatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaat |
517 |
Q |
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| T |
34771006 |
aatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatcttaattttgtaat |
34770907 |
T |
|
| Q |
518 |
tactattttatccctgatcttttatttgaaaaagtagtgtgttcttctctc |
568 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34770906 |
tactattttatccctgatcttttatttgaaaaagtagtgtgttcttttctc |
34770856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 568
Target Start/End: Complemental strand, 34781365 - 34781205
Alignment:
| Q |
405 |
tttgtaaaaattgaatggaataaaatggattatatagtagaatgcattccatcatatactatcatctcttattatttttcattccctcaaatgaaacatc |
504 |
Q |
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|||||||||||||||||||||||||||||| |||| || |||||||| |||| ||||| |||||||||||||||||||| |||| | |||||||||| |
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| T |
34781365 |
tttgtaaaaattgaatggaataaaatggat--tataatataatgcatttcatcgtataccatcatctcttattatttttctttcctcc--atgaaacatc |
34781270 |
T |
|
| Q |
505 |
ttaattttgtaattactattttatccctgatc-ttttatttgaaaaagtagtgtgttcttctctc |
568 |
Q |
| |
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|||||||| ||||||||||||||| || ||| ||||||||||| ||||||||||| ||| |||| |
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| T |
34781269 |
ttaattttaaaattactattttatctctaatctttttatttgaacaagtagtgtgtccttttctc |
34781205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 34795717 - 34795615
Alignment:
| Q |
18 |
acatgaaactaacctttacatggcttggttttgttgtggtaaagatcaattagagacacgaaaactagatagaagtaggaagcgagattctctctctttc |
117 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||| |||||| |
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| T |
34795717 |
acatgaaactaacctttacatggtttggttttgttgtggtaaagatcaattagagagacgagtactagagggaagtaggaagtgagattctctttctttc |
34795618 |
T |
|
| Q |
118 |
att |
120 |
Q |
| |
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||| |
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| T |
34795617 |
att |
34795615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 34780869 - 34780767
Alignment:
| Q |
18 |
acatgaaactaacctttacatggcttggttttgttgtggtaaagatcaattagagacacgaaaactagatagaagtaggaagcgagattctctctctttc |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| | ||||||||||| |||||||||| |||||| |
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| T |
34780869 |
acatgaaactaacctttacatggtttggttttgttgtggtaaagatcaattagagagacgagtactaaagggaagtaggaagtgagattctctttctttc |
34780770 |
T |
|
| Q |
118 |
att |
120 |
Q |
| |
|
||| |
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|
| T |
34780769 |
att |
34780767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 501 - 568
Target Start/End: Complemental strand, 11549556 - 11549489
Alignment:
| Q |
501 |
catcttaattttgtaattactattttatccctgatcttttatttgaaaaagtagtgtgttcttctctc |
568 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11549556 |
catcttaattttgtaattactattctatccctgatcttttatttgaaaaagtagtgtgtccttttctc |
11549489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 301 - 369
Target Start/End: Complemental strand, 34795353 - 34795285
Alignment:
| Q |
301 |
agttgaatttttagttattttttatcaattgattcaaacttcgttagctctttttattattgttattat |
369 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |
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| T |
34795353 |
agttaaattttttgttattttttatcaattgagtcaaacttcgttggctctatttattattgttattat |
34795285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 301 - 367
Target Start/End: Complemental strand, 34780570 - 34780505
Alignment:
| Q |
301 |
agttgaatttttagttattttttatcaattgattcaaacttcgttagctctttttattattgttatt |
367 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||| || |||||||||| |||||||| |
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| T |
34780570 |
agttgaatttttagttattttttatcaattgagtcgaacttcg-taattctttttatttttgttatt |
34780505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 34795512 - 34795418
Alignment:
| Q |
191 |
caatgctacttatttggcctaaagaagtttagatgaatcggatttcgcaacttaatagaattagagttacttctgagactctctaaagatgtatt |
285 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||| || |||||| ||| | || ||||||||||| ||||| |
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| T |
34795512 |
caatgctacttatttggcacaaaaaagtttaaatgagtcggatttcgcaacttaattgagttagagctaccttatagtctctctaaagaggtatt |
34795418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 411 - 458
Target Start/End: Complemental strand, 34777720 - 34777675
Alignment:
| Q |
411 |
aaaattgaatggaataaaatggattatatagtagaatgcattccatca |
458 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
34777720 |
aaaattgaatggaataaaatggat--gatagtagaatggattccatca |
34777675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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