View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12708_high_1 (Length: 353)
Name: NF12708_high_1
Description: NF12708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12708_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 42667292 - 42666962
Alignment:
| Q |
1 |
agacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgttctattcta |
100 |
Q |
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| T |
42667292 |
agacataaaagcgttgaaaattttcagagcattctgaattctgaacctgctactactgtgccttcttattcttctccttttcctgatttgttctattcta |
42667193 |
T |
|
| Q |
101 |
agaaaaacaaacagaagaaacttaactctgtttcgccgtcacaacatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttttctgtgat |
200 |
Q |
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| T |
42667192 |
agaaaaacaaacagaagaaacttaactctgtttcgccgtcacaaaatcatgtttcagctatgattatgtcaaaaacaaaggatgaggatttttctgtgat |
42667093 |
T |
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| Q |
201 |
tactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggtgacttt |
300 |
Q |
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| T |
42667092 |
tactggtaatgagtcgccattgaactcaatacctccaccgcctcctcctccacctccgttcaagatgccagcatggaagttcaaggtgcagggtgacttt |
42666993 |
T |
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| Q |
301 |
gttagaatagatagcattagtagttcaagtt |
331 |
Q |
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| T |
42666992 |
gttagaatagatagcattagtagttcaagtt |
42666962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 42667427 - 42667380
Alignment:
| Q |
1 |
agacataaaagcgttgaaaattttcagagcattctgaattctgaacct |
48 |
Q |
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|||||||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667427 |
agacataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 42667354 - 42667311
Alignment:
| Q |
5 |
ataaaagcgttgaaaattttcagagcattctgaattctgaacct |
48 |
Q |
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|||||||||||||||||||||||| |||| | |||||||||||| |
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| T |
42667354 |
ataaaagcgttgaaaattttcagaacattataaattctgaacct |
42667311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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