View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12708_low_1 (Length: 561)

Name: NF12708_low_1
Description: NF12708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12708_low_1
NF12708_low_1
[»] chr5 (18 HSPs)
chr5 (11-545)||(38986873-38987408)
chr5 (160-534)||(39725745-39726119)
chr5 (146-534)||(39879125-39879521)
chr5 (352-545)||(40417805-40417998)
chr5 (146-452)||(40411830-40412144)
chr5 (146-290)||(1164332-1164476)
chr5 (443-544)||(1164090-1164191)
chr5 (443-544)||(1849575-1849676)
chr5 (179-351)||(1849323-1849495)
chr5 (438-545)||(3299099-3299206)
chr5 (438-545)||(3391992-3392099)
chr5 (180-284)||(3298832-3298936)
chr5 (180-281)||(3391725-3391826)
chr5 (449-534)||(39399520-39399605)
chr5 (436-510)||(40596238-40596312)
chr5 (443-534)||(39168516-39168607)
chr5 (203-266)||(39168281-39168340)
chr5 (57-110)||(39874044-39874097)
[»] chr4 (1 HSPs)
chr4 (161-545)||(25912670-25913058)
[»] chr3 (1 HSPs)
chr3 (156-200)||(55345733-55345777)


Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 11 - 545
Target Start/End: Original strand, 38986873 - 38987408
Alignment:
Q  11 cataggagtggaaaagtaaatctcaaaaaataaataaagagtatgatgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  38986873 cataggagtggaaaagtaaatctcaaaaaataaataaagagtaagatgggccaaacccgcgattagaactgagaattttggccctaaaccataaataaat 38986972  T
Q  111 aaatagatagaataaaaagtgagtt-cggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg 209  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38986973 aaatagatagaataaaaagtgagtttcggcaattgctgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtg 38987072  T
Q  210 aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987073 aaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaa 38987172  T
Q  310 tcatatacgacgttgatcaaggtttttctttctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38987173 tcatatacgacgttgatcaaggtttttctttctgtttcaatataatatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtc 38987272  T
Q  410 taattgggctatgattattcctagaactgaaagataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgtt 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  38987273 taattgggctatgattattcctagaactgaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgtt 38987372  T
Q  510 gttgcttctttgggtccaaatattggtcctattgtc 545  Q
    ||||||||||||||||||||||||||||||||||||    
T  38987373 gttgcttctttgggtccaaatattggtcctattgtc 38987408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 160 - 534
Target Start/End: Original strand, 39725745 - 39726119
Alignment:
Q  160 aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725745 aattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttgga 39725844  T
Q  260 gcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctttctgtttcaatataacatct 359  Q
    |||||||||||||||||||||||||| |||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39725845 gcagatcagcgttatgaccaatcttgctatcgttgatcgtgttgagagaatcatatacgacgttgatcaaggtttttctttctgtttcaatataacatct 39725944  T
Q  360 tgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgattattcctagaactgaaagataccttttttctgttg 459  Q
    ||||||||| ||||||||| |||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  39725945 tgtgcttggcattttgcgagacttataggggaaatagttcctgtcaagtctgcttgggctatgattattcctagaactgaaagataccttttttctgttg 39726044  T
Q  460 aaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 534  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39726045 aaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 39726119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 146 - 534
Target Start/End: Original strand, 39879125 - 39879521
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt 239  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||   |||||||||||   ||| ||||||||||||||||||| ||| ||     
T  39879125 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg 39879224  T
Q  240 cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctt 339  Q
    |||||| |||||||||||||||||||||||||| ||| |||| |||||| | ||  | | | | ||| ||||| ||||||| ||||| ||||||||||||    
T  39879225 cgtactttctttcatttggagcagatcagcgttttgaacaattttggtaccgttcgtaaagctaagagaatcaaatacgacattgatgaaggtttttctt 39879324  T
Q  340 tctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcc--tgtcaagtctaattgggctatgattattcctagaact 437  Q
    ||||||||  | ||||||||| ||||||| |||||| |  |||||| | | | ||| ||||  |||||||| | |||||| ||||||| |||||  || |    
T  39879325 tctgtttccgtttaacatcttatgcttgggattttgtggaacttattgagaaaatacttcctgtgtcaagtttgattgggatatgattcttcctgaaagt 39879424  T
Q  438 gaaagataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 534  Q
    |||| ||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39879425 gaaatatacctttttcgtgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 39879521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 352 - 545
Target Start/End: Original strand, 40417805 - 40417998
Alignment:
Q  352 taacatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgattattcctagaactgaaagatacctttt 451  Q
    ||||||||| ||||||| |||||| || |||||||||||| ||| ||||||||| || | |||||| |||||||  ||||  || |||||||||||||||    
T  40417805 taacatcttttgcttggcattttgtgaaacttataggggaaatacttcctgtcaggtttgattgggatatgattcctcctgaaagtgaaagatacctttt 40417904  T
Q  452 ttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtcctattgtc 545  Q
    |  ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  40417905 tcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttcggtgaaaatattggtcctattgtc 40417998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 146 - 452
Target Start/End: Original strand, 40411830 - 40412144
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtgg---cgttctgttgt---gaaagttcgtcaacaacatgtttctcaactt 239  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||   |||||||||||   ||| ||||||||||||||||||| ||| ||     
T  40411830 tgcaattgcaaagaaattaggtcaaagagtggagaagatggaggaagggtggtggcgttctgttgttgtgaatgttcgtcaacaacatgtttgtcagctg 40411929  T
Q  240 cgtactgtctttcatttggagcagatcagcgttatgaccaatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctt 339  Q
    |||||| |||||||||||||||||||||||||| ||| |||| |||||| | ||  | | | | ||| ||||| ||||||| ||||| ||||||||||||    
T  40411930 cgtactttctttcatttggagcagatcagcgttttgaacaattttggtaccgttcgtaaagctaagataatcaaatacgacattgatgaaggtttttctt 40412029  T
Q  340 tctgtttcaatataacatcttgtgcttggtattttgcgacacttataggggacatagttcc--tgtcaagtctaattgggctatgattattcctagaact 437  Q
    ||||||||  | ||||||||| ||||||| |||||| |  |||||| | | | ||| ||||  |||||||| | |||||| ||||||| |||||  || |    
T  40412030 tctgtttccgtttaacatcttatgcttgggattttgtggaacttattgagaaaatacttcctgtgtcaagtttgattgggatatgattcttcctgaaagt 40412129  T
Q  438 gaaagataccttttt 452  Q
    |||| ||||||||||    
T  40412130 gaaatataccttttt 40412144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 146 - 290
Target Start/End: Complemental strand, 1164476 - 1164332
Alignment:
Q  146 tgcaattgcaaagaaattaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtact 245  Q
    |||||||| ||| ||||||||||| ||||||  |||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| |||| ||||||    
T  1164476 tgcaattggaaaaaaattaggtcagaaagtgtcgaagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtact 1164377  T
Q  246 gtctttcatttggagcagatcagcgttatgaccaatcttggtatc 290  Q
     | ||||||||||||||| ||||||||  || | |||||||||||    
T  1164376 ttgtttcatttggagcaggtcagcgtttggaaccatcttggtatc 1164332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 443 - 544
Target Start/End: Complemental strand, 1164191 - 1164090
Alignment:
Q  443 ataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtcctatt 542  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  |||  ||| ||||||||| |||||||||||||||||||||    
T  1164191 ataccttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctatt 1164092  T
Q  543 gt 544  Q
    ||    
T  1164091 gt 1164090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 443 - 544
Target Start/End: Original strand, 1849575 - 1849676
Alignment:
Q  443 ataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtcctatt 542  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||  |||  ||| ||||||||| |||||||||||||||||||||    
T  1849575 ataccttttttctgttgaaatcgtcccaatttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctatt 1849674  T
Q  543 gt 544  Q
    ||    
T  1849675 gt 1849676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 179 - 351
Target Start/End: Original strand, 1849323 - 1849495
Alignment:
Q  179 gaagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacc 278  Q
    |||||||||| ||||||   || |||||||||| ||||||||||||||||||||| |||| |||||| | ||||||||||||||| ||||||||  || |    
T  1849323 gaagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaac 1849422  T
Q  279 aatcttggtatccttgatgatgttgagaaaatcatatacgacgttgatcaaggtttttctttctgtttcaata 351  Q
     |||| |||||||||||  |  ||  || ||||| |||| || | ||| ||||||| ||||||||||||||||    
T  1849423 catctcggtatccttgaaaagattcggagaatcaaatacaacatcgatgaaggtttgtctttctgtttcaata 1849495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 438 - 545
Target Start/End: Original strand, 3299099 - 3299206
Alignment:
Q  438 gaaagataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtc 537  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||  ||||||||  | |  ||| ||||||||| ||||||||||||||||    
T  3299099 gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc 3299198  T
Q  538 ctattgtc 545  Q
    ||||||||    
T  3299199 ctattgtc 3299206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 438 - 545
Target Start/End: Original strand, 3391992 - 3392099
Alignment:
Q  438 gaaagataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtc 537  Q
    ||||||| | |||||||||||||||||||||| ||||| ||||||||||||||  ||||||||  | |  ||| ||||||||| ||||||||||||||||    
T  3391992 gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc 3392091  T
Q  538 ctattgtc 545  Q
    ||||||||    
T  3392092 ctattgtc 3392099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 3298832 - 3298936
Alignment:
Q  180 aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca 279  Q
    ||||||||| ||||||||  |  |||| |||| ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||  |||||    
T  3298832 aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca 3298931  T
Q  280 atctt 284  Q
    |||||    
T  3298932 atctt 3298936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 180 - 281
Target Start/End: Original strand, 3391725 - 3391826
Alignment:
Q  180 aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca 279  Q
    ||||||||| ||||||||  |  |||| |||| ||||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||||  |||||    
T  3391725 aagatggaggaagggtgggttggtgttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggacca 3391824  T
Q  280 at 281  Q
    ||    
T  3391825 at 3391826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 449 - 534
Target Start/End: Original strand, 39399520 - 39399605
Alignment:
Q  449 tttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 534  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||| | |||| |||||| || ||| |||||||||    
T  39399520 tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaatattg 39399605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 510
Target Start/End: Original strand, 40596238 - 40596312
Alignment:
Q  436 ctgaaagataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttg 510  Q
    |||| ||||||  ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  40596238 ctgatagatacactttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcctcctaaggttg 40596312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 534
Target Start/End: Original strand, 39168516 - 39168607
Alignment:
Q  443 ataccttttttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg 534  Q
    ||||| ||||| ||||||||||||||| |||| |||||| |||||||| |||||||| |||||  ||| |||| || | ||| |||||||||    
T  39168516 ataccatttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattg 39168607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 266
Target Start/End: Original strand, 39168281 - 39168340
Alignment:
Q  203 tgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatc 266  Q
    ||||||||| ||||||||||||||||||||||| |    |||| ||||||||||||||||||||    
T  39168281 tgttgtgaaggttcgtcaacaacatgtttctcatc----tactttctttcatttggagcagatc 39168340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 39874044 - 39874097
Alignment:
Q  57 tgggccaaacccgcaattagaaccgaaaattttggccctaaaccataaataaat 110  Q
    |||||||||||||| |||||||| ||||||| ||||||||||| | ||||||||    
T  39874044 tgggccaaacccgcgattagaactgaaaattctggccctaaacaacaaataaat 39874097  T

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Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 161 - 545
Target Start/End: Complemental strand, 25913058 - 25912670
Alignment:
Q  161 attaggtcaaaaagtggagaagatggagcaagggtggcgttctgttgtgaaagttc--gtcaacaacatgtttctcaacttcgtactgtctttcatttgg 258  Q
    ||||||||||||| || ||||||||||| |||||||||| ||||||||||| ||||  ||||||||||||||| |||||| |||||| ||||||||||||    
T  25913058 attaggtcaaaaaatgaagaagatggaggaagggtggcgctctgttgtgaatgttctcgtcaacaacatgtttgtcaactgcgtactttctttcatttgg 25912959  T
Q  259 agcagatcagcgttatgaccaatcttggt--atccttgatgatgttgagaaaa---tcatatacgacgttgatcaaggtttttctttctgtttcaatata 353  Q
    ||||||||||||||| ||   || ||  |  | | ||  | ||| | ||| ||   ||| ||||||| ||||| |||||||||| |||||||||  || |    
T  25912958 agcagatcagcgttacgagacattttaatacaccgttcgtaatgctaagagaatattcaaatacgacattgatgaaggtttttccttctgtttccgtaga 25912859  T
Q  354 acatcttgtgcttggtattttgcgacacttataggggacatagttcctgtcaagtctaattgggctatgattattcctagaactgaaagatacct---tt 450  Q
    ||||||| ||| ||| |||||| || |||||||||||||||||||||||||| || | |||||| |||||||  ||      |||||| ||| ||   ||    
T  25912858 acatcttttgcatggcattttgtgaaacttataggggacatagttcctgtcaggtttcattgggatatgattcctc------ctgaaatatatctttctt 25912765  T
Q  451 tttctgttgaaatcgtccctatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattggtcctattgtc 545  Q
    ||| ||||||||||||||| |||| |||| |||||||||| |||||||||||||| |||| |||||||||  ||  |||||||||||||||||||    
T  25912764 tttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtc 25912670  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 55345777 - 55345733
Alignment:
Q  156 aagaaattaggtcaaaaagtggagaagatggagcaagggtggcgt 200  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||    
T  55345777 aagaaattaggtcaaagagtggagaatatggaggaagggtggcgt 55345733  T

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