View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12708_low_4 (Length: 262)
Name: NF12708_low_4
Description: NF12708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12708_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 25523399 - 25523170
Alignment:
| Q |
16 |
tatgacctaaacacaccaaatgattttcaacacattcctaacaattaaacctaacatgccaacaaaccaacatagatatacatatgctagaatttcatgc |
115 |
Q |
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| T |
25523399 |
tatgacctaaacacaccaaatgattttcaacacattcctaacaattaaacctaacatgccaacaaaccaacatagatatacatatgctagaatttcatgc |
25523300 |
T |
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| Q |
116 |
ttgatgctaaaatttgatttcccttaaaaacatttacaatttcactatctcttatatatctaaagtaaaagtacaagcatgtcattctcctcatttctga |
215 |
Q |
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| T |
25523299 |
ttgatgctaaaatttgatttcccttaaaaacatttacaatttcactatctcttatatatctaaagtaaaaccacaagcatgtcattctcctcatttctga |
25523200 |
T |
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| Q |
216 |
taataaccatgaacaagatcacataggaat |
245 |
Q |
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| T |
25523199 |
taataaccatgaacaagatcacataggaat |
25523170 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 13467287 - 13467344
Alignment:
| Q |
183 |
aaagtacaagcatgtcattctcctcatttctgataataaccatgaacaagatcacata |
240 |
Q |
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| T |
13467287 |
aaagtacaagcatgcaattctccttatttctgatattaaccagaaacatgatcacata |
13467344 |
T |
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