View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12708_low_6 (Length: 214)
Name: NF12708_low_6
Description: NF12708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12708_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 52137787 - 52137839
Alignment:
| Q |
15 |
tcactgcacataaacaacaaccttcatcaccaacatcatctcatcactaactc |
67 |
Q |
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| T |
52137787 |
tcactgcacataaacaacaaccttcatcaccaacatcatctcatcactaactc |
52137839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 52137932 - 52137977
Alignment:
| Q |
160 |
gcatgaaatgttgatgaagagagccggcgcccagaaaacataatga |
205 |
Q |
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| T |
52137932 |
gcatgaaatgttgatgaagagagccagcgcccagaaaacataatga |
52137977 |
T |
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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 9853884 - 9853936
Alignment:
| Q |
15 |
tcactgcacataaacaacaaccttcatcaccaacatcatctcatcactaactc |
67 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9853884 |
tcactacacataaacaacaaccatcatcaccaacatcatctcatcactaactc |
9853936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 9854045 - 9854090
Alignment:
| Q |
160 |
gcatgaaatgttgatgaagagagccggcgcccagaaaacataatga |
205 |
Q |
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||||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
9854045 |
gcatgaaatgttgatgaagagagacagcgcccataaaacataatga |
9854090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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