View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_high_1 (Length: 583)
Name: NF12709_high_1
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Original strand, 50228886 - 50229440
Alignment:
| Q |
19 |
attatgttctttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaattgtaaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50228886 |
attatgttctttccaaataattcaaatacatgtcatccaaattgcctgaaaacacatacaaaattcctttctaaacaagtaagcaccacaaaatt-taaa |
50228984 |
T |
|
| Q |
119 |
gcatgctctccaatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatc |
218 |
Q |
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| T |
50228985 |
gcatgctctccaatgtcaactgggttcacaaaacaatacccaaccaccgacaaacgccattccaaacattactaaaaacttcacaacctaaaaaaatatc |
50229084 |
T |
|
| Q |
219 |
cttaattgtttcctccttcccaccccctcccgggcaaagcaaagaagtagcaggcaccactccacgttgaaaaaagaagatccttagtaggaatcctttt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50229085 |
cttaattgtttcctccttcccaccccctcccgggcaaagcaaagaagtagcaagcaccactccatgttgaaaaaagaagatccttagtaggaatcctttt |
50229184 |
T |
|
| Q |
319 |
gttcaagagcctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagnnnnnnntatctaagttgggttgatcacatgcttatga |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50229185 |
gttcaagagcctccatatataatgatatcttcatagtttagttttgttccaaaccaaatgagaaaaaaatatctaagttgggttgatcacatgcttatga |
50229284 |
T |
|
| Q |
419 |
gtttgataagcatctttgactgaatatccgttagacagattaagtaaccaaagtcatcaatcaaccatgttaacctgtnnnnnnngccgcctcctaagta |
518 |
Q |
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| T |
50229285 |
gtttgataagcatctttgactgaatatccgttagacagactaagtaaccaaagtcatcaatcaaccatgttaacctgtaaaaaaagccgcctcctaagta |
50229384 |
T |
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| Q |
519 |
aaaagacgccttctccacctctgcacatccactccccaccctcacctatgcttctc |
574 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50229385 |
aaaagacgccttctccacctctgcacatccactccccaccctcacctatgcatctc |
50229440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 68 - 290
Target Start/End: Original strand, 39380661 - 39380885
Alignment:
| Q |
68 |
aaacacatacaaaattcctttctaaacaagtaagcaccacaaaa-ttgtaaagcatgctctccaatgtcaactgggttcacaaaacaa-tacccaaccac |
165 |
Q |
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||||||||||||| | ||||||| |||| |||||||||||||| ||||| |||| |||||||| |||||| ||| ||| |||||||| |||||||||| |
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| T |
39380661 |
aaacacatacaaattccctttctgaacatataagcaccacaaaaattgtagagcaagctctccattgtcaattggattctcaaaacaaatacccaaccat |
39380760 |
T |
|
| Q |
166 |
cgacaaacgccattccaaacattactaaaaacttcacaacctnnnnnnntatccttaattgtttcctccttcccaccccctcccgggcaaagcaaagaag |
265 |
Q |
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||| |||| ||||||||||||||||||||||| ||||| | | | ||| |||||||||||||||||| |||||| | |||| |||||||| |
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| T |
39380761 |
cgaaaaacaccattccaaacattactaaaaacatcacatcttaattaaagacaattagttgtttcctccttcccacaccctcctgaacaaaacaaagaag |
39380860 |
T |
|
| Q |
266 |
tagcaggcaccactccacgttgaaa |
290 |
Q |
| |
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|| |||||| ||||||||| ||||| |
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| T |
39380861 |
tatcaggcaacactccacggtgaaa |
39380885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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