View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_high_11 (Length: 300)
Name: NF12709_high_11
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 17059722 - 17059992
Alignment:
| Q |
20 |
ttaagcactattgtggtgattctccaattgtttctcttgattcctcgatcagatgaacagttcatgaaattattgaatcatgcttaggttaaacaaggag |
119 |
Q |
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| T |
17059722 |
ttaagcactattgtggtgattccccaatggtttctcttgattcctcagtcagatgaacagttcatgaaattattgaatcatgcttaggttgaacaaggag |
17059821 |
T |
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| Q |
120 |
aatgtgttatgcaggctttgccatgcgtggatcacatggaccaagatatttccttgttttcttgatatgagtttggaacttaagaaagagttcccccaag |
219 |
Q |
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| T |
17059822 |
aatgtgtcatgcaggctttgccatgcgtggatcacatggaccaagatatttccttgttttcttgatatgagtttggaacttaaggaagagttcccccaag |
17059921 |
T |
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| Q |
220 |
ttgttttgtctttaaaccttcgttgttcttaattatttagcttccataacatttatgaggtttctttcttc |
290 |
Q |
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| T |
17059922 |
ttgttttgtctttaaaccttcgttgttcttaattatttagcttccataacttttatgaggtgtttttcttc |
17059992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 43625714 - 43625682
Alignment:
| Q |
210 |
ttcccccaagttgttttgtctttaaaccttcgt |
242 |
Q |
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| T |
43625714 |
ttcccccaagttgttttgtctttaaaccttcgt |
43625682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 29539094 - 29539038
Alignment:
| Q |
213 |
ccccaagttgttttgtctttaaaccttcgttgttcttaattatttagcttccataac |
269 |
Q |
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| T |
29539094 |
ccccaagttgtattgtcttcaaaccttcgtcgcacttgattatctagcttccataac |
29539038 |
T |
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