View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12709_high_16 (Length: 232)

Name: NF12709_high_16
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12709_high_16
NF12709_high_16
[»] chr6 (1 HSPs)
chr6 (11-226)||(18355902-18356117)
[»] chr8 (13 HSPs)
chr8 (11-226)||(2989502-2989717)
chr8 (11-232)||(2711019-2711240)
chr8 (11-103)||(9850830-9850922)
chr8 (177-226)||(2980394-2980443)
chr8 (178-226)||(3170170-3170218)
chr8 (16-105)||(2980518-2980607)
chr8 (11-104)||(3002612-3002705)
chr8 (16-100)||(3141901-3141985)
chr8 (177-226)||(3142065-3142114)
chr8 (170-226)||(3002487-3002543)
chr8 (11-101)||(3170000-3170090)
chr8 (177-226)||(9850999-9851048)
chr8 (190-226)||(3173747-3173783)
[»] scaffold0065 (3 HSPs)
scaffold0065 (11-105)||(45748-45842)
scaffold0065 (19-104)||(50915-51000)
scaffold0065 (177-226)||(45621-45670)
[»] chr1 (1 HSPs)
chr1 (11-232)||(10755390-10755614)
[»] chr7 (1 HSPs)
chr7 (11-122)||(3918882-3918993)


Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 18356117 - 18355902
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  18356117 cacacatcaaataaggcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaactaacaagtatctcttaccagttaaattgacttg 18356018  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||| |||| || |||||||||||||| ||||||||    ||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||     
T  18356017 aagcatactttgcaactcttctaatgtcttatttacaacgtcctctttggttaataacgcaaccatgttcttcagaatagttttgaaatcaaagttatct 18355918  T
Q  211 gagacacatacccaca 226  Q
    ||||||||||||||||    
T  18355917 gagacacatacccaca 18355902  T

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Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 2989717 - 2989502
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  2989717 cacacatcaaataaggcctcaattgatcccacttttcaaaacactcattccaaacgtcgtcgagaactaacaagtatctctgaccagttaaattgacttg 2989618  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||| |||| || |||| ||||||||| |||||||||   |||||||||||  ||||||||| |||||||||||||||||||| ||||||| ||||     
T  2989617 aagcatactttgcaactcttgtaatgtcttatttacaacatcatctttggttaatgacgcaaccatgttcttcagaatagttttgaaatcaaagttatcc 2989518  T
Q  211 gagacacatacccaca 226  Q
    ||||||||||||||||    
T  2989517 gagacacatacccaca 2989502  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 2711019 - 2711240
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| || |  | ||||||||||||| ||||||| ||||||||| |    
T  2711019 cacacatcaaataagtcctcaattcatcccacttttcataactctcgttccaaatgtcatccaagactaacaagtatctcgtaccagtcaaattggctcg 2711118  T
Q  111 aatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagctatca 210  Q
    || |||||| || || ||||||||  |||| | | ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  2711119 aagcatattctgcaactcttctaaattcttatctgcaatattgtctttggttaacaacgcaaccatgttcttcagaatagttttgacatcaaagttatcc 2711218  T
Q  211 gagacacatacccacaaactct 232  Q
    |||||||||||||||| |||||    
T  2711219 gagacacatacccacatactct 2711240  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 9850830 - 9850922
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaat 103  Q
    |||| |||||||||||| |||||||| |||| |||||| ||||||||||||||| ||| || |||| ||||||||||||||||||||||||||    
T  9850830 cacacatcaaataagtcttcaattgagcccatttttcataactctcattccaaatgtcatctagaactaacaagtatctcttaccagttaaat 9850922  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 2980443 - 2980394
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2980443 gttcttcagaatagttttgacatcaaagttatcagagacacatacccaca 2980394  T

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Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 3170170 - 3170218
Alignment:
Q  178 ttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3170170 ttcttcagaatagttttgacatcaaagttatcagagacacatacccaca 3170218  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 2980607 - 2980518
Alignment:
Q  16 atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg 105  Q
    |||||||||||| ||||||||||||||||||||  |||||  ||||||| ||| || || | |||||||||| | |||||||||||||||    
T  2980607 atcaaataagtcgtcaattgatcccacttttcattactcttgttccaaatgtcatctaggactaacaagtattttttaccagttaaattg 2980518  T

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Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 3002705 - 3002612
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt 104  Q
    |||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| ||| ||||| | ||| ||  ||||||| ||| |||||||    
T  3002705 cacacatcaaataagtcctcaattgagcccatttttcaaaactctcgttccaaatgtcatcgaggattaagaaaaatctcttcccatttaaatt 3002612  T

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Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 3141901 - 3141985
Alignment:
Q  16 atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagtta 100  Q
    ||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||| || || | |||||||||| | ||||||||||    
T  3141901 atcaaataagtcctcaattgagcccattttccaaaactctcgttccaaatgtcatctaggactaacaagtattttttaccagtta 3141985  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 3142065 - 3142114
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    |||||||| ||||||||||||||||||| ||||||||||||| |||||||    
T  3142065 gttcttcacaatagttttgacatcaaagttatcagagacacaaacccaca 3142114  T

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Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 3002543 - 3002487
Alignment:
Q  170 caaccaagttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    |||||| |||||||| ||||||||| ||||||||| | |||||||||||||||||||    
T  3002543 caaccatgttcttcacaatagtttttacatcaaagttttcagagacacatacccaca 3002487  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 3170000 - 3170090
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaa 101  Q
    |||| |||||||||||| |||||||| |||| ||||||||||| || |||||||  || || |||| ||||| ||||||| || |||||||    
T  3170000 cacacatcaaataagtcttcaattgagcccatttttcaaaactgtcgttccaaatatcatctagaactaacaggtatctcatagcagttaa 3170090  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 9850999 - 9851048
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||||||    
T  9850999 gttcttcacaatagttttgacttcaaagttttcagagacacatacccaca 9851048  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 3173747 - 3173783
Alignment:
Q  190 gttttgacatcaaagctatcagagacacatacccaca 226  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  3173747 gttttgacatcaaagttatcagagacacaaacccaca 3173783  T

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Target: scaffold0065 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 45842 - 45748
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg 105  Q
    |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||||||||    
T  45842 cacacatcaaataagtcttcaattgatcccacttttctaaactctcattccaaacgtcatcaagaagtagcaagtatctcttaccagttaaattg 45748  T

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Target: scaffold0065; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 51000 - 50915
Alignment:
Q  19 aaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt 104  Q
    ||||||||||||||||||   || |||||||||||||| ||||||| ||| || || | |||||||||||||||||| ||||||||    
T  51000 aaataagtcctcaattgagaacatttttcaaaactctcgttccaaatgtcatctaggactaacaagtatctcttacctgttaaatt 50915  T

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Target: scaffold0065; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 45670 - 45621
Alignment:
Q  177 gttcttcagaatagttttgacatcaaagctatcagagacacatacccaca 226  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||||||||    
T  45670 gttctttagaatagttttgacatcaaagttattagagacacatacccaca 45621  T

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Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 10755390 - 10755614
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||||||||| | || |||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||  |  |    
T  10755390 cacacatcaaataagtcattaactgatcccacttttcaaaactcttattccaaacgtcatccagaagtaacaagtatctcttaccagttaaattttcacg 10755489  T
Q  111 aatcatattttgtaattcttctaatg-tcttgttta--caacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagcta 207  Q
    || ||||||||| || |  || |||| |  ||| |   |||   |||  ||||||||  || | | || ||||||||||||||||||||| |||||| ||    
T  10755490 aagcatattttgcaagttgtccaatgataatgtgtcatcaattttgttcttggttaatgactccaacatgttcttcagaatagttttgacgtcaaagtta 10755589  T
Q  208 tcagagacacatacccacaaactct 232  Q
    ||||||||||||||||||| |||||    
T  10755590 tcagagacacatacccacatactct 10755614  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 3918882 - 3918993
Alignment:
Q  11 cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattggcttg 110  Q
    |||| |||||| |||||||||| ||| |||| |||||||||||||| ||||||| ||| || | || |||||||||||||||||| ||||||||| |  |    
T  3918882 cacacatcaaaaaagtcctcaagtgagcccatttttcaaaactctcgttccaaatgtcatccaaaactaacaagtatctcttacctgttaaattgtcacg 3918981  T
Q  111 aatcatattttg 122  Q
    || |||||||||    
T  3918982 aaacatattttg 3918993  T

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