View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_high_2 (Length: 510)
Name: NF12709_high_2
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 495
Target Start/End: Complemental strand, 34426996 - 34426515
Alignment:
| Q |
15 |
cagagaggtataaactatgaaatattatctcatatcttgattaactttgtactcctgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaat |
114 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426996 |
cagagaggtataaactatgaattattatctcatatcttgattaactttgtactactgatgtcaaacatcctgtgccctttatgtgattgacaatgcaaat |
34426897 |
T |
|
| Q |
115 |
gaacagcatgaaatttgatgttgcctcaaccttaaatattgtagctttttagataatcctttcttgacttgaccaatggtctcagactcgattattagtt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426896 |
gaacagcatgaaatttgatgttgcctcaaccttaaatattgtagcttgttagataatcctttcttgacttgaccaatggtctcagactcgattattagtt |
34426797 |
T |
|
| Q |
215 |
tagatattttcagattcttaatagcatagatttgagtcttttgccactctcatacatagtcacagataaaaagaacttggaatagtttacatgcctcaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426796 |
tagatattttcagattcttaatagcatagatttgagtcttttgccactctcatacatagtcacagataaaaagaacttggaatagtttacatgcctcaag |
34426697 |
T |
|
| Q |
315 |
atattttcgatcagaaattttcacaacagtgctagtttcagtatcaataccactttgtatcatctcaattatttgggaactgagactgtc-nnnnnnnnn |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34426696 |
atattttcgatcagaaattttcacaacagtgctagtttcagtatcaataccactttgtatcatctcaataatttgggaactgagactgtctttttggttt |
34426597 |
T |
|
| Q |
414 |
nnnnnngttgctttgaatttgaggtactattttgtttcattgttatgcagtcttctataaacagtgaggtggatgaaatttt |
495 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34426596 |
ttttttgttgctttgaatttgaggtcctattttgtttcattgttatgcagtcttctataaacagtgaggtggatgaaatttt |
34426515 |
T |
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