View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_high_4 (Length: 417)
Name: NF12709_high_4
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 45123171 - 45123580
Alignment:
| Q |
1 |
aagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctt |
100 |
Q |
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| T |
45123171 |
aagatacatcaatcagaaatattttaagtatatatctgaattttatcttttctattatactcttgcggtagagtgttgtagatatagtttggtattgctt |
45123270 |
T |
|
| Q |
101 |
tggagattgtgggtgtaccgggatcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgttattggacaatg |
200 |
Q |
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| T |
45123271 |
tggagattgtgggtgtatcggggtcaatggagtgtttgactagtctatgtgttgtaaaagtttgcatatagtattattttctagttgtcattggacaatg |
45123370 |
T |
|
| Q |
201 |
atcatagtttcgtctccgctttttgaagtttccacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttca |
300 |
Q |
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| T |
45123371 |
atcatagtttcgtctccgctttttgaagtttctacctatgttgtgattgtgtttctttattttctctatgttgatcttttccaacacaattttgtcttca |
45123470 |
T |
|
| Q |
301 |
actatgaaaaatgtttctcaaatgtatccttctatgaatgtctattacagaatattatgaatattagtgatgatgtattgattaaatgtatttttaacgg |
400 |
Q |
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| T |
45123471 |
actatgaaaaatgtttctcaaatatatccttctatgaatgtctattacaaaatattatgaatattagtgatgatgtattgattaaatgtatttttaacgg |
45123570 |
T |
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| Q |
401 |
tcttcatctc |
410 |
Q |
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|||||||||| |
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| T |
45123571 |
tcttcatctc |
45123580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 22190691 - 22190644
Alignment:
| Q |
152 |
ttgtaaaagtttgcatatagtattattttctagttgttattggacaat |
199 |
Q |
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| T |
22190691 |
ttgtaaaaatttgcatatagtgttattctctagttgtcattggacaat |
22190644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 35397459 - 35397399
Alignment:
| Q |
1 |
aagatgcatcagtcagaaatattttaagtatatatatgaattttatcttttctattatact |
61 |
Q |
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||||||||||||||||||| ||||||||| ||||| ||| ||| ||||||| ||||||| |
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| T |
35397459 |
aagatgcatcagtcagaaacattttaagtttatatgtgacattttccttttctcttatact |
35397399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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