View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12709_high_6 (Length: 372)
Name: NF12709_high_6
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 38748977 - 38749278
Alignment:
| Q |
1 |
atgaaaattctagatcacgatatatagaattttatgtatataatacacaaagaggtgtccatgcaatgtactttgatacattgcatttcttttgctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38748977 |
atgaaaattctagatcacgatatatagaattttatgtatagaatacacaaagaggtgtccatgaaatgtactttgatacattgcatttcttttgctttgt |
38749076 |
T |
|
| Q |
101 |
cttttcg-tttttatccgtttctcttccttgacttagtatagtt--ttaccctacaaattctcattcataactccataatttgctggataagcatgcgat |
197 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38749077 |
cttttcgttttttatccgtttctcttccttgacttagtatagttagttaccctacaaattctcattcataactccataatttgctggataagcatgcgat |
38749176 |
T |
|
| Q |
198 |
aaaattgttggggcatgactcatgatcaggtctaagatatgg----tatattgag-taaaaacaattacataaatgagttgcaaatcaaatcttatctta |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
38749177 |
aaaattgttggggcatgactcatgatcaggtctaagatatggcatatatattgagctaaaaacaattgcataaataagttgcaaatcaaatcttatctta |
38749276 |
T |
|
| Q |
293 |
ac |
294 |
Q |
| |
|
|| |
|
|
| T |
38749277 |
ac |
38749278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University