View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12709_high_9 (Length: 308)
Name: NF12709_high_9
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_high_9 |
 | |
|
| [»] chr8 (13 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
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|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0065 (2 HSPs) |
| | |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 2711219 - 2711514
Alignment:
| Q |
13 |
gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2711219 |
gagacacatacccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa |
2711318 |
T |
|
| Q |
113 |
caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2711319 |
caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa |
2711418 |
T |
|
| Q |
213 |
cacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2711419 |
cacaaaagaactactttccctccttacatcattagttttcttaaccaccacaacattggagttaagattcaacacagacatatctttcacaacatc |
2711514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 2980411 - 2980115
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
2980411 |
cagagacacatacccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattgagcaagagccgtctttcccaaaccaccaatacc |
2980312 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
|||||||||||||| || || | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||| |
|
|
| T |
2980311 |
aacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttttatcatcttctcttccaatgatatttgattct |
2980212 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacat |
307 |
Q |
| |
|
|||||| |||||| | ||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2980211 |
aacacataagaacaagtttccctccttacattgttagctttctcaaccaccacaacattggagttaagattcaacacagacatatctttcacaacat |
2980115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 3170201 - 3170492
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3170201 |
cagagacacatacccacatcctcttttcaaaagactttgttacttgagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
3170300 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3170301 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttctttttatcatcttctcttccaatgatctctgattct |
3170400 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcac |
302 |
Q |
| |
|
|||||||||||||| |||||||||||||| | | ||| |||||||||||||||| | ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
3170401 |
aacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccaggcatatctttcac |
3170492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 2989517 - 2989263
Alignment:
| Q |
13 |
gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa |
112 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2989517 |
gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa |
2989418 |
T |
|
| Q |
113 |
caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||| ||||| |||||||| |
|
|
| T |
2989417 |
caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatctcagattctaa |
2989318 |
T |
|
| Q |
213 |
cacaaaagaactactttccctccttacatcattagttttctcaaccaccacaaca |
267 |
Q |
| |
|
|||| |||| | | ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2989317 |
cacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaaca |
2989263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 3142097 - 3142394
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||| ||||||| || ||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
3142097 |
cagagacacaaacccacatacacttttcaaaataatttgttacttcaccatcattgtataccaattgagaaagagctgtctttcccaaaccaccaatccc |
3142196 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||| | ||||||||||| ||||||||||| || ||||| ||| |
|
|
| T |
3142197 |
aacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttttatcatcatctcttccaatgatatctgactct |
3142296 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
|||||||||||||| |||| ||||| ||| |||||||| || ||||||||||||| | | ||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
3142297 |
aacacaaaagaacttttttctctcctaacactattagtttgctgaaccaccacaacattcgggtttagattcaacacagacatatctttcaccacatc |
3142394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 3002504 - 3002208
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||||||||||| ||||||| |||||||| |||||||||| ||||||||| ||||||||||| || |
|
|
| T |
3002504 |
cagagacacatacccacatacttatttcaaacaaattttgcacttctccatcattatataccaactgagcaagagttgtctttcctaaaccaccaatccc |
3002405 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
||||||||||| |||||||||||| || ||| |||||| ||| ||||| | | |||||||| ||||||||| |||||||||||||| || || |||||| |
|
|
| T |
3002404 |
aacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatctcctttttatcgtcttctcttccaatgatatccgattct |
3002305 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
||||| ||||||||| ||||||||| ||||| | | ||| ||||||||||||||| | | ||| |||||| || |||||||||||||||||||||| |
|
|
| T |
3002304 |
aacaccaaagaactagtttccctccctacattgtaattttgttcaaccaccacaacatttgggtttagattc-acccagacatatctttcacaacatc |
3002208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 9851031 - 9851328
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||| |||||| ||| || | || ||||||||||| |||||||||||||||||||| || |
|
|
| T |
9851031 |
cagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttgagcaagagttgtctttcccaaaccaccaaatcc |
9851130 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
||||| ||||| ||| |||||||| ||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| || || ||||| |
|
|
| T |
9851131 |
aacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattttatcatcttctcttccaatgatatccgattcc |
9851230 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
||||||||||||||| | || ||||||||| ||||||| | |||||||||||| | ||||| ||||||||| ||||||||||||| || ||||| |
|
|
| T |
9851231 |
aacacaaaagaactagtctctctccttacacagttagtttgttgaaccaccacaacgtttgagtttagattcaacccagacatatcttttactacatc |
9851328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 2916062 - 2916318
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||| ||||||||||| | ||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||| || ||||| |||||||| |
|
|
| T |
2916062 |
cagacacacatacccatatcttcttttcaaactttttttgcacttccccatcattatataccagttgagcaagagctgtcttacctaaaccgccaatacc |
2916161 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
|||||| |||| |||||||||||| || ||| ||||| ||||||||| || ||| ||||| ||||||| ||||||||| ||||| || ||||||||| |
|
|
| T |
2916162 |
aacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttttattatcttctctaccaatgatatctgattct |
2916261 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaaca |
267 |
Q |
| |
|
|| |||||||| | | |||| ||||||||||| | | ||| || |||||||||||| |
|
|
| T |
2916262 |
aatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaaca |
2916318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 3173800 - 3173885
Alignment:
| Q |
45 |
attttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggaga |
130 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
3173800 |
attttgcacttctccatcattgtataccaattgagcaagagctgtcttccccaaaccaccaattccaactattgcaaccagggaga |
3173885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 2911153 - 2911224
Alignment:
| Q |
60 |
atcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagac |
131 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2911153 |
atcattgtataccaactgagcaagagctgtcttgcctaaaccaccaataccaacaatagctatcaaggagac |
2911224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3282582 - 3282639
Alignment:
| Q |
164 |
ttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaaga |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | || | ||||||||||| |||||| |
|
|
| T |
3282582 |
ttataatctcctttttatcatcttctcttccattgatatttgattctaacaaaaaaga |
3282639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 13791312 - 13791255
Alignment:
| Q |
164 |
ttataatcttctttttatcatcttctcttccaataatctctgattctaacacaaaaga |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||| || || | ||||||||||| |||||| |
|
|
| T |
13791312 |
ttataatctcctttttatcatcttctcttcccatgatgtttgattctaacaaaaaaga |
13791255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 13791454 - 13791349
Alignment:
| Q |
16 |
acacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaa |
115 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||||||||| |||||| || | ||| |||||||| |||| |
|
|
| T |
13791454 |
acacatacccacattttcttttcaaaatgcttttgcacttccacatcattatatacgaatcgagcaagagttgtcttgccaatacctccaatacctacaa |
13791355 |
T |
|
| Q |
116 |
tagcaa |
121 |
Q |
| |
|
|| ||| |
|
|
| T |
13791354 |
taacaa |
13791349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 10755591 - 10755888
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||||||||||| |||||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||| ||||| || |||||||||||||| |
|
|
| T |
10755591 |
cagagacacatacccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccaccaatacc |
10755690 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| || | ||||||| |
|
|
| T |
10755691 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatatttgattct |
10755790 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
10755791 |
aacacaaaagaactagtttccctccttacatcgttagttttctcaaccactacaacatttgagttaagattcaacccagacatatctttcaccacatc |
10755888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 308
Target Start/End: Complemental strand, 18355917 - 18355622
Alignment:
| Q |
13 |
gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa |
112 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||||| ||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18355917 |
gagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaataccaa |
18355818 |
T |
|
| Q |
113 |
caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa |
212 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
18355817 |
caatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagattctaa |
18355718 |
T |
|
| Q |
213 |
cacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
|||| |||| | | ||||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
18355717 |
cacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacattggagttaagtttcaaataagacatatctttctcaacatc |
18355622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 302
Target Start/End: Complemental strand, 45637 - 45347
Alignment:
| Q |
12 |
agagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacca |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||| | ||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
45637 |
agagacacatacccacatcctcttttcaaaagactttgttacttcaccatcattgtataccaattgagcaagagctgtctttcccaaaccgccaatccct |
45538 |
T |
|
| Q |
112 |
acaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattcta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| || || ||||||||| |
|
|
| T |
45537 |
acaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttctatcatcttctcttccgatgatatctgattctg |
45438 |
T |
|
| Q |
212 |
acacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcac |
302 |
Q |
| |
|
||||||||||||| |||||||||||||| | | ||| |||||||||||||||| | ||||| ||||||||| |||||||||||||||| |
|
|
| T |
45437 |
acacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttagattcaacccagacatatctttcac |
45347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 50808 - 50509
Alignment:
| Q |
11 |
cagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaatacc |
110 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||| | |||| |||||| | |||||||| || ||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
50808 |
cagagacacacacccacatactctttccaaaactcttttttacttcaccgtcattgtaaactaattgagcaagagttgtctttcccaaaccaccaatccc |
50709 |
T |
|
| Q |
111 |
aacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattct |
210 |
Q |
| |
|
|||||||||||||| || |||| ||| |||||||||| || |||||||||||||| ||||| |||| ||| ||||||||||| || || || ||||| |
|
|
| T |
50708 |
aacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatctcattttaatcgtcttctcttccgatgatatcagattcg |
50609 |
T |
|
| Q |
211 |
aacacaaaagaactactttccctccttacatcattagttttctcaaccac--cacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
||||||||||||||| ||||| || ||||| ||| ||| ||| ||||| ||||| | | | ||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
50608 |
aacacaaaagaactattttccttctttacaatgttactttgctccaccaccacacaatatttgtgtttagattcaacccagacatatctttcaccacatc |
50509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 3919085 - 3919380
Alignment:
| Q |
13 |
gagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaa |
112 |
Q |
| |
|
|||||||||||||||| |||| |||||||| | ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||| |||| |
|
|
| T |
3919085 |
gagacacatacccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaaccaccaatcccaa |
3919184 |
T |
|
| Q |
113 |
caatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgattctaa |
212 |
Q |
| |
|
||||| |||||| ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
3919185 |
caataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgatatccgattctaa |
3919284 |
T |
|
| Q |
213 |
cacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaacatc |
308 |
Q |
| |
|
| |||| ||||| |||||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||| |||||||||| ||||| ||||| |
|
|
| T |
3919285 |
cgcaaatgaacttgtttccctccttacactcttagtttgttgaaccaccacaacatttgagtttagattcaacccagacatatcattcaccacatc |
3919380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 32408720 - 32408650
Alignment:
| Q |
51 |
cacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaa |
121 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||| || ||||||||||| || || |||||||||| ||||| |
|
|
| T |
32408720 |
cacttcatcatcattataaaccaattgcgcaagcgccgtctttcccaacccgcccataccaacaacagcaa |
32408650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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