View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_low_12 (Length: 307)
Name: NF12709_low_12
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 125 - 300
Target Start/End: Original strand, 23994457 - 23994635
Alignment:
| Q |
125 |
cgcgttgtcgtttggaaacgtagctacctggaagaatg------ggagaaggagaagggagatagggttttggtgggtatgaaggagtgtgagatgattt |
218 |
Q |
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| T |
23994457 |
cgcgttgtcgtttggaaacgtagctacctggaagaatgagagaaggagaaggagaagggagatagggttttggtgggtatgaagaagtgtgagatgattt |
23994556 |
T |
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| Q |
219 |
caatcgtttgggtttttcttcttcttcatctgaggaattcgaataagcgttgcgcagaagttccatgtgtgtgttcttctct |
300 |
Q |
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| T |
23994557 |
tagtcgtttggg---ttcttcttcttcatctgaggaatttgaataagcgttgcgcagaagttccatgtgtgtgttcttctct |
23994635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 23994353 - 23994439
Alignment:
| Q |
15 |
caagtagtagaaaatggaaagaaaaatagtaccagaaagcgtgaaagaagaggattgtgatgaagaaatggtagttgcagtagagat |
101 |
Q |
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| T |
23994353 |
caagtagtagaaaatggaaagaaaaatagtaccggagagcgtgaaagaagaggattgtgatgaagaaatggtagttgtagtagagat |
23994439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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