View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_low_15 (Length: 276)
Name: NF12709_low_15
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 259
Target Start/End: Original strand, 36146615 - 36146855
Alignment:
| Q |
19 |
gcttataccaagaattttttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaac |
118 |
Q |
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| T |
36146615 |
gcttataccaagaattttttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaac |
36146714 |
T |
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| Q |
119 |
tcctcatttataaggacttcaactctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtga |
218 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36146715 |
tcctcatttataaggacttcaattctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtga |
36146814 |
T |
|
| Q |
219 |
ctggatgcctttgaatagtgttgggatcaattataggttca |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36146815 |
ctggatgcctttgaatagtgttgggatcaattataggttca |
36146855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 256
Target Start/End: Original strand, 36075261 - 36075477
Alignment:
| Q |
40 |
catattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggacttca |
139 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||| ||||||| |||||| |
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| T |
36075261 |
catatattccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccacacttgccacttccaaccaattcctcacttataagaacttca |
36075360 |
T |
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| Q |
140 |
actctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtgactggatgcctttgaatagtgt |
239 |
Q |
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||| || || |||||||||||||||||||||| |||||||||| | |||| ||||||| ||||| |||||||| | ||||||||||||||||||| |
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| T |
36075361 |
actatctcagatactttccacaaatctctgaattgcaacttgagacctctcttctgacaaaattcattaagctctgcgctgggatgcctttgaatagtgt |
36075460 |
T |
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| Q |
240 |
tgggatcaattataggt |
256 |
Q |
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||||||||||| |||| |
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| T |
36075461 |
ggggatcaattacaggt |
36075477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 36156509 - 36156732
Alignment:
| Q |
36 |
tttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggac |
135 |
Q |
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|||| ||||| ||||||||||||||||| || |||| |||||||| |||||||||||||||||| || ||||||||||| | |||||| || | ||| |
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| T |
36156509 |
tttctatattatccaaagcattttttgcagctctataatgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcattgatgaagac |
36156608 |
T |
|
| Q |
136 |
ttcaactctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtgactggatgcctttgaata |
235 |
Q |
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|||| |||||| | || |||||| ||| ||||||||| || | ||||||| ||||||||||| |||||||||| || |||||| | | || |
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| T |
36156609 |
atcaatgttcatagatttttcccacaagtctacgaattgtaaattcaattttttcttctgacaaacttcttgaagctctgaaacgggatgcttctcaacg |
36156708 |
T |
|
| Q |
236 |
gtgttgggatcaattataggttca |
259 |
Q |
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||||| || ||||||||||||||| |
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| T |
36156709 |
gtgtttggctcaattataggttca |
36156732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 36162540 - 36162709
Alignment:
| Q |
36 |
tttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggac |
135 |
Q |
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|||| ||||| | ||||||||| ||||| || |||| ||||||| |||||||||||||||||| || ||||||||||| | ||||||||||| ||| |
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| T |
36162540 |
tttctatattattcaaagcattctttgcagctctataacgtgcaatgtctttcttagagccataagtgcctcttccaacaaatttctcatttataaagac |
36162639 |
T |
|
| Q |
136 |
ttcaactctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttca |
205 |
Q |
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|||| |||||| ||||||||||| ||| ||||||||| || | ||||||| |||||||||||| |
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| T |
36162640 |
atcaatgttcatagattctttccacaagtctacgaattgtaaattcaattttttcttctgacaaacttca |
36162709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 26530390 - 26530168
Alignment:
| Q |
36 |
tttccatattttccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggac |
135 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26530390 |
tttccatattttgcaaaacattttttgctgccctattgcgtgcaatttctttcttagaaccataaacaccacttccaacaaactcctcatttataaggac |
26530291 |
T |
|
| Q |
136 |
ttcaactctcatagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtgactggatgcctttgaata |
235 |
Q |
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|
|||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| | ||||||||||||||| |
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| T |
26530290 |
ttcaactctcatagactctttccacaaatctctgaattgtaacttgagtcttttattgtgacaaacttcatgaagctctgccatcggatgcctttgaata |
26530191 |
T |
|
| Q |
236 |
gtgttgggatcaattataggttc |
258 |
Q |
| |
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||||||||||||||||| ||||| |
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| T |
26530190 |
gtgttgggatcaattatgggttc |
26530168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 226
Target Start/End: Complemental strand, 26525986 - 26525807
Alignment:
| Q |
47 |
tccaaagcattttttgctgccctattgtgtgcaatttctttcttagagccataaacaccacttccaacaaactcctcatttataaggacttcaactctca |
146 |
Q |
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||||||||||||||||| || |||| ||| |||| |||||||||||||||||| || ||||||||||| | |||||| || | ||| |||| ||| |
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| T |
26525986 |
tccaaagcattttttgcagctctataatgtacaatgtctttcttagagccataagtgcctcttccaacaaatttctcattgatgaagacatcaatgttca |
26525887 |
T |
|
| Q |
147 |
tagtctctttccacaaatctctgaattgtaacttgagacttttcttttgacaaacttcatgaagctctgtgactggatgc |
226 |
Q |
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| | | || |||||| ||| |||||||| || | ||||||| |||||||||||||||||||||||||| |||||| |
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| T |
26525886 |
ttgatttttcccacaagtctacaaattgtaaattaaattttttcttctgacaaacttcatgaagctctgtgacgggatgc |
26525807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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