View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_low_16 (Length: 273)
Name: NF12709_low_16
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 20 - 257
Target Start/End: Complemental strand, 45123068 - 45122831
Alignment:
| Q |
20 |
aagtggaggaatcaccttgttcttcttgcaaagatcacgaaacaaccttgcttatcttgttctacctcttcttttataatttaagtagttaatgtaggac |
119 |
Q |
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| T |
45123068 |
aagtggaggaatcatcttgttcttcttacaaagatcacgaaacaaccttgtttatcttgttctacctcttcttttataatttaagtagttaatgtaggac |
45122969 |
T |
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| Q |
120 |
ttctccaacatgtattttttcagccaacaacaacagattgaaattttcatattcctagagataaaattttgagcttactaccaaatcggagatcattttc |
219 |
Q |
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| T |
45122968 |
ttctccaacatgtattttttcagtcaacaacaacaaattgaaattttcatattcctagagataaaattttgagcttactaccaaatcggagatcattttc |
45122869 |
T |
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| Q |
220 |
gttgccaaaacattatactagtaacaaacactaacaag |
257 |
Q |
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| T |
45122868 |
gttgccaaaacattatactagtaccaaacactaacaag |
45122831 |
T |
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