View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12709_low_20 (Length: 219)
Name: NF12709_low_20
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 15628648 - 15628460
Alignment:
| Q |
13 |
gcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttacacattaccttttcagctaaggaactcga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15628648 |
gcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttactcattaccttttcagctaaggaactcga |
15628549 |
T |
|
| Q |
113 |
caactcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatcctaatataggtggtcatggcatggctttc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15628548 |
caactcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatcctaatataggtggtcatggcatggctttc |
15628460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 22933028 - 22933212
Alignment:
| Q |
17 |
agatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttacacattaccttttcagctaaggaactcgacaac |
116 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| | ||| ||| ||||||||||||||||||| | |||||||||||||| |||||| ||||| |
|
|
| T |
22933028 |
agatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggccatgctttttactctcaaccttttcagctaaagaactcaacaac |
22933127 |
T |
|
| Q |
117 |
tcgtaaagcttactcattttcttcatcttttgctcttgctgttgtccctgagtatcctaatataggtggtcatggcatggctttc |
201 |
Q |
| |
|
| ||||||||| || ||||| ||| | |||||| |||||||||| ||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
22933128 |
tggtaaagctttttccttttcatcaacctttgctattgctgttgttcctgagtatcctagagttggtggtcatggcatggctttc |
22933212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 24382737 - 24382698
Alignment:
| Q |
12 |
agcagagatagagaaaaatgggatgataagattaacaaat |
51 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
24382737 |
agcagagatagagaaaaatggtataataagattaacaaat |
24382698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 36386045 - 36386081
Alignment:
| Q |
15 |
agagatagagaaaaatgggatgataagattaacaaat |
51 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36386045 |
agagatagagaaaaatggtataataagattaacaaat |
36386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University