View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12709_low_4 (Length: 419)
Name: NF12709_low_4
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 401
Target Start/End: Complemental strand, 26631205 - 26630817
Alignment:
| Q |
11 |
cagagagaaatttgtcgatgattttgtatcgttgttaaaactgaaaagcgttactcaattttggaaacaaggtagtcaattttctcttctttgtgaatca |
110 |
Q |
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| T |
26631205 |
cagagagaaatttgtcgatgattttgtatccttgtgaaaactgaaaagcttaactcaattgtggaaacaagttagttaattttctctt---tgtgaatca |
26631109 |
T |
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| Q |
111 |
aaataagtgctaggtgatgttaattttgtccttacttcttgtggtgtgctaatattgaaatattcaaa-tttatctattctatttgttaaagtttctaaa |
209 |
Q |
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| T |
26631108 |
aaatgagaacaaggtgatgttaattgtgtccttacttcttgtggtttgctgatactgaaatattcaaaatttatctattctctttgtttaagtttctaaa |
26631009 |
T |
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| Q |
210 |
gaacttaacatgatttgcagatgaactcattgccaatgctgcttacattggctctcctggaaagggtatccttgctgctgatgaatctaccggcacaatt |
309 |
Q |
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| T |
26631008 |
gaacttaacatgatttgcagatgaactcattgccaatgctgcttacattggctctcctggaaagggtatccttgctgctgatgaatctactggcacaatc |
26630909 |
T |
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| Q |
310 |
ggaaagcgattcgccagcatcaatgtggagaatgttgaagcaaacagacgtactcttcgcgaactcttgttcaccgcccctggttgtttaga |
401 |
Q |
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| T |
26630908 |
ggcaagcgattcgccagcatcaacgtcgagaatgttgaagcaaacagacgtactcttcgcgaactcctgttcactgcccctggttgtttaga |
26630817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 393
Target Start/End: Complemental strand, 29234762 - 29234591
Alignment:
| Q |
222 |
atttgcagatgaactcattgccaatgctgcttacattggctctcctggaaagggtatccttgctgctgatgaatctaccggcacaattggaaagcgattc |
321 |
Q |
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| T |
29234762 |
atttgcagatgagcttattgccaatgctgcatacatcggcacacctggaaaaggtattcttgctgctgatgagtcaaccggaacaattggaaagcgccta |
29234663 |
T |
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| Q |
322 |
gccagcatcaatgtggagaatgttgaagcaaacagacgtactcttcgcgaactcttgttcaccgcccctggt |
393 |
Q |
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| T |
29234662 |
gctagcatcggcgttgagaatgttgaatccaacagacgtgctctccgtgaactccttttcaccgcccctggt |
29234591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 393
Target Start/End: Complemental strand, 29238619 - 29238448
Alignment:
| Q |
222 |
atttgcagatgaactcattgccaatgctgcttacattggctctcctggaaagggtatccttgctgctgatgaatctaccggcacaattggaaagcgattc |
321 |
Q |
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| T |
29238619 |
atttgcagatgagcttatcgccaatgccgcctacatcggcacacctggaaaaggtattcttgctgctgatgagtcaaccgggacaattggaaagcgtcta |
29238520 |
T |
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| Q |
322 |
gccagcatcaatgtggagaatgttgaagcaaacagacgtactcttcgcgaactcttgttcaccgcccctggt |
393 |
Q |
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| T |
29238519 |
tctagcatcagcgttgagaatgttgaatccaacagacgtgctctccgtgaactccttttcaccgcccctggt |
29238448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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