View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12709_low_6 (Length: 411)
Name: NF12709_low_6
Description: NF12709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12709_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 15873911 - 15873517
Alignment:
| Q |
1 |
ttgccacccaatatggtttccaacattgaagaacatggtcaaatggaaacacaatctgaaggaaatgaacacaattcgatgaggaaaaatacaactcaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
15873911 |
ttgccacccaatatggtttccaacattgaagaacatggtaaaatggaaacacaatctgaaggaagtgaacacaattcgatgaggaaaaataaaactcaag |
15873812 |
T |
|
| Q |
101 |
accaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15873811 |
accaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcaagtggtagcaaataa |
15873712 |
T |
|
| Q |
201 |
gacggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttcctatt-ttttgttcaatgatgtcacaccttan |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
15873711 |
gacagatgagtggaactggagtaacatttcgttcacgtctaaatggtttaatggagaactaaggcttcctatttttttgttcaatgacgtcacaccttat |
15873612 |
T |
|
| Q |
300 |
nnnnnncgaaacttagtagcatatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15873611 |
ttttttcgaaacttagtagcatatgagatgtgttcagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
15873517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 5 - 394
Target Start/End: Original strand, 15921189 - 15921580
Alignment:
| Q |
5 |
cacccaatatggtttccaacattgaagaacatggtcaaatggaaacacaatctgaaggaaatgaacacaattcgatgaggaaaa-atacaactcaagacc |
103 |
Q |
| |
|
||||||| | |||||||||| | |||| |||||| |||||||||||||| | |||||| |||||| | ||| ||| |||||| ||||||||||||||| |
|
|
| T |
15921189 |
cacccaaaaaggtttccaacgtcgaaggacatggccaaatggaaacacagttggaaggaggtgaacatagttcaatgcggaaaaaatacaactcaagacc |
15921288 |
T |
|
| Q |
104 |
aagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagac |
203 |
Q |
| |
|
||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15921289 |
aagaagacagtgatgaggaagatattaattttaattggaatacttataagagcatacgggatctaaaaacagtaggaattcgagtggtagcaaataagac |
15921388 |
T |
|
| Q |
204 |
ggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttcctat-tttttgttcaatgatgtcacaccttannnn |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
15921389 |
agatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaattaaggcttcctatgtttttgtttaatgacgtcacaccttatttt |
15921488 |
T |
|
| Q |
303 |
nnncgaaacttagtagcatatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15921489 |
tttcgaaatttaatagcatatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattgattga |
15921580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 394
Target Start/End: Original strand, 15900161 - 15900530
Alignment:
| Q |
20 |
ccaacattgaagaacatggtcaaatggaaacacaatctgaaggaaatgaacacaattcgatgaggaaaaatacaactcaagaccaagaagatattgatga |
119 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| ||||| || |||||||||| | | ||||||||| ||||||||| |||||| |||| | |
|
|
| T |
15900161 |
ccaactttgaagaacatgcccaaatggaaaaacaatatgaagaaagtgaacacaatccaa------aaaatacaaagcaagaccaaaaagatagtgataa |
15900254 |
T |
|
| Q |
120 |
ggaagaaattaatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacggatgagtggaactgg |
219 |
Q |
| |
|
| ||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||| |||||| |||| |
|
|
| T |
15900255 |
gccagaaattgatttcaattggaatacttataagagcatacgggatctaaaaacagtaggaattcaagtggtagcaaataagacagataagtggacctgg |
15900354 |
T |
|
| Q |
220 |
agtaacatttcgttcaagtctaaatggtttagtggagaactaagacttccta-ttttttgttcaatgatgtcacaccttannnnnnncgaaacttagtag |
318 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| || || ||||| ||||||||| ||| |
|
|
| T |
15900355 |
agtaacatttctttcaagtctaaatggtttagtggcgaactaaggcttcctatttttttgttcaatgacgtaactccttatgtttttcgaaacttaatag |
15900454 |
T |
|
| Q |
319 |
catatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
15900455 |
catatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattgattga |
15900530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 26 - 394
Target Start/End: Complemental strand, 14060302 - 14059930
Alignment:
| Q |
26 |
ttgaagaacatggtcaaatggaaacacaatctgaaggaaatgaacacaattcgatgaggaaaaatacaactcaagaccaagaagatattgatgaggaaga |
125 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||||||||||| |||| | || |||||||||| | ||||||||||| ||| || ||||| |
|
|
| T |
14060302 |
ttgaagaacaaggtcagatggaaacacaatcagaaggaaatgaacccaatcaaaccggggaaaatacaaccttaaaccaagaagatgatgacgatgaaga |
14060203 |
T |
|
| Q |
126 |
aatt---aatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacggatgagtggaactggagt |
222 |
Q |
| |
|
| || | || ||||||||||||||||| |||||| |||||||||| | | |||||||||||||| | |||||||||| |||| |||| |||||| |
|
|
| T |
14060202 |
agttcttagttgtaattggaatacttataaaagcataagggatctaaaaataataggaattcgagtgaaaccaaataagacagatgcatggacatggagt |
14060103 |
T |
|
| Q |
223 |
aacatttcgttcaagtctaaatggtttagtggagaactaagacttcctatt-ttttgttcaatgatgtcacaccttannnnnnncgaaacttagtagcat |
321 |
Q |
| |
|
||| |||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
14060102 |
aacgtttctttcaagtctaagtggttgagtggagaactaagacttcctatttttttgttcaatgatgtcacaccttatttttttcgaaacttaatagcat |
14060003 |
T |
|
| Q |
322 |
atgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14060002 |
atgagatgtgtccagatgttcgctacaactacgaatgttgctcgttctttaccttcatggattcattggttga |
14059930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 210 - 394
Target Start/End: Complemental strand, 15880511 - 15880328
Alignment:
| Q |
210 |
gtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttcctatttttt-gttcaatgatgtcacaccttannnnnnncga |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| ||||| |||| ||| |
|
|
| T |
15880511 |
gtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttcctatttttttgttcaatgacgtcac--cttatttttttcga |
15880414 |
T |
|
| Q |
309 |
aacttagtagcatatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15880413 |
aacttagtagcatatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
15880328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 23 - 394
Target Start/End: Complemental strand, 14048934 - 14048559
Alignment:
| Q |
23 |
acattgaagaacatggtcaaatggaaacacaatctgaaggaaatgaacacaattcgatgaggaaaaatacaactcaagaccaagaagatattgatgagga |
122 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| || ||||||||||||| |||| | || |||||||||| | ||||||||||| |||||| || |
|
|
| T |
14048934 |
acattgaagaacaaggtcagatggaaacacattcagaaggaaatgaacccaatcaaacaggggaaaatacaaccttaaaccaagaagatgatgatgatga |
14048835 |
T |
|
| Q |
123 |
agaaatt---aatttgaattggaatacttataagagcatacgggatctaaagacagtaggaattcgagtggtagcaaataagacggatgagtggaactgg |
219 |
Q |
| |
|
|||| || | || | |||||||||||||| |||||| |||||||||| | ||||||||||||||| | |||||||||| |||| |||| ||| |
|
|
| T |
14048834 |
agaagttcttagttgttaatggaatacttataaaagcataagggatctaaaaatggtaggaattcgagtgaaaccaaataagacagatgcatggacatgg |
14048735 |
T |
|
| Q |
220 |
agtaacatttcgttcaagtctaaatggtttagtggagaactaagacttcctatt-ttttgttcaatgatgtcacaccttannnnnnncgaaacttagtag |
318 |
Q |
| |
|
|||||| |||| ||||||||||| ||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
14048734 |
agtaacgtttccttcaagtctaagtggttgagtggagaactacgacttcctatttttttgttcaatgatgtcacgccttatttttttcgaaacttaatag |
14048635 |
T |
|
| Q |
319 |
catatgagatgtgtccagatgttcattacaactatgaatgttgctcgttctttagcttcatggattcattggttga |
394 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
14048634 |
catatgagatgtgtccggatgttcgctacaactatgaatgttgctcattctttaccttcatggattcattggttga |
14048559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University