View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1270_high_17 (Length: 444)
Name: NF1270_high_17
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_high_17 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: scaffold0618 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 106 - 307
Target Start/End: Original strand, 7224 - 7425
Alignment:
| Q |
106 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7224 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
7323 |
T |
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| Q |
206 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcagagttgaattgatcaaagtatagtgaaagaaataaaagtgat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7324 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcagagttgaattgatcaaagtatagtgaaagaaataaaagtgat |
7423 |
T |
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| Q |
306 |
tg |
307 |
Q |
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|| |
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| T |
7424 |
tg |
7425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 106 - 307
Target Start/End: Complemental strand, 44092687 - 44092486
Alignment:
| Q |
106 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44092687 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
44092588 |
T |
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| Q |
206 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcagagttgaattgatcaaagtatagtgaaagaaataaaagtgat |
305 |
Q |
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| T |
44092587 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgattcatttcagagttgaattgatcaaagtatagtgaaagaaataaaagtgat |
44092488 |
T |
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| Q |
306 |
tg |
307 |
Q |
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|| |
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| T |
44092487 |
tg |
44092486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 106 - 256
Target Start/End: Original strand, 44087923 - 44088073
Alignment:
| Q |
106 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44087923 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
44088022 |
T |
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| Q |
206 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44088023 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44088073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 106 - 256
Target Start/End: Complemental strand, 44067186 - 44067036
Alignment:
| Q |
106 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttctgatgcagttaaattttctgttggtaattttttggctggtgattct |
205 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067186 |
taatactgatggaagagttaaatggcctggttttcatgttattactaatccttcagatgcagttaaattttctgttggtaattttttggctggtgattct |
44067087 |
T |
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| Q |
206 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44067086 |
tggatttctggtagtggtgtgccgtttgatgcaggtttgtgaatattgatt |
44067036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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