View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_high_19 (Length: 436)
Name: NF1270_high_19
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_high_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 97 - 421
Target Start/End: Complemental strand, 13537949 - 13537625
Alignment:
| Q |
97 |
ataaatcaaacaaccatatcataaacttcaattattgttggtatgacacaacacaaccaagtatacattttacttaataattagggtttgccaaaacgta |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13537949 |
ataaatcaaacaaccatatcataaacttcaattattattggtatgacacaacacaaccaagtatacattttacttaataattagggtttgccaaaacgta |
13537850 |
T |
|
| Q |
197 |
tccctcaatggccttgataagtccagttcctttggtcttagtttcatcacgcactgcatcagatagagttgcatcacctttggtgtggtatttcactgaa |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13537849 |
tccctcaatggccttgataagtccagttcctttggtcttagtttcatcacgcactgcatcagatagagttgcatcacctttggtgtggtatttcactgaa |
13537750 |
T |
|
| Q |
297 |
atcttaacaatggatccaccatcagagccagccacaatacttgtctcgaattcaactttttctaaactttcatccaaccctgttcctcctacaatgctat |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13537749 |
atcttaacaatggatccaccatcagagccagccacaatacttgtctcgaattcaactttttctaaactttcatccaaccctgttcctcctacaatgctat |
13537650 |
T |
|
| Q |
397 |
agttgtatcccaagtttgcttcatc |
421 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13537649 |
agttgtatcccaagtttgcttcatc |
13537625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 174 - 421
Target Start/End: Complemental strand, 13541913 - 13541666
Alignment:
| Q |
174 |
taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagtttcatcacgcactgcatcagatagagttgcatcac |
273 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||||| || || ||||||||| |||||||| |
|
|
| T |
13541913 |
taattagggtttgccaaaacataaccctcaatggccttgataagtccagttcctttggccttagtttcctcacgtacagcttcagatagaactgcatcac |
13541814 |
T |
|
| Q |
274 |
ctttggtgtggtatttcactgaaatcttaacaatggatccaccatcagagccagccacaatacttgtctcgaattcaactttttctaaactttcatccaa |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
13541813 |
ctttggtgtgatatttcactgaaatcttaacaatggatccaccatcagatccagccacaatatttgtctcaaattcaactttctctaaactttcatccaa |
13541714 |
T |
|
| Q |
374 |
ccctgttcctcctacaatgctatagttgtatcccaagtttgcttcatc |
421 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
13541713 |
tcctgttcctcctactatgctatagttgtatcccaagtttgcctcatc |
13541666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 170 - 422
Target Start/End: Complemental strand, 13554735 - 13554483
Alignment:
| Q |
170 |
ttaataattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagtttcatcacgcactgcatcagatagagttgca |
269 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13554735 |
ttaataatcaggatttgccaaaacgtaaccctcaatggccttgataagtccagttcctctggccttagtctcatcacgcactgcatcagatagagttgca |
13554636 |
T |
|
| Q |
270 |
tcacctttggtgtggtatttcactgaaatcttaacaatggatccaccatcagagccagccacaatacttgtctcgaattcaactttttctaaactttcat |
369 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |
|
|
| T |
13554635 |
tcacctttggtgtgatatttaactgtaatcttagcaatggatccaccatcagagccagccacaatttttgtctcgaattcaactttctctagactttcat |
13554536 |
T |
|
| Q |
370 |
ccaaccctgttcctcctacaatgctatagttgtatcccaagtttgcttcatct |
422 |
Q |
| |
|
|||| |||||||||||||| | ||||||||||||||| |||||||| |||||| |
|
|
| T |
13554535 |
ccaatcctgttcctcctactaagctatagttgtatccaaagtttgcctcatct |
13554483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 174 - 422
Target Start/End: Complemental strand, 13531009 - 13530761
Alignment:
| Q |
174 |
taattagggtttgccaaaacgtatccctcaatggccttgataagtccagttcctttggtcttagtttcatcacgcactgcatcagatagagttgcatcac |
273 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||| |||||| || ||||| ||||||||||||||| |||||||| |
|
|
| T |
13531009 |
taattagggtttgccaagacgtagccctcaatagccttgataagaccagttcctttggccttagtctcctcacgtactgcatcagatagaactgcatcac |
13530910 |
T |
|
| Q |
274 |
ctttggtgtggtatttcactgaaatcttaacaatggatccaccatcagagccagccacaatacttgtctcgaattcaactttttctaaactttcatccaa |
373 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13530909 |
ctttggtgtgatatttcactgaaatcttaacaatggatccaccatcagacccagcaacaatatttgtctcgaattcaactttctctaaactttcatccaa |
13530810 |
T |
|
| Q |
374 |
ccctgttcctcctacaatgctatagttgtatcccaagtttgcttcatct |
422 |
Q |
| |
|
||||||||||||||| | ||| ||||| ||||| ||||||| |||||| |
|
|
| T |
13530809 |
ccctgttcctcctactaagctgtagttatatccatagtttgcctcatct |
13530761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University