View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1270_high_2 (Length: 628)
Name: NF1270_high_2
Description: NF1270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1270_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 7978458 - 7978721
Alignment:
| Q |
52 |
gggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagnnnnnnncaagcttcctttcactgtgattattttgttgtaat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7978458 |
gggtaggagaatgagggccaaaaacaatactatcaacaaagatgatcataataactagtttttttcaagcttcctttcactgtgattattttgttgtaat |
7978557 |
T |
|
| Q |
152 |
gtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcatagagagcccatctaaacataagcgtctaaaaacttatttgta |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7978558 |
gtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcatagagagcccatctaaacataagcgtctaaaaacttatttgta |
7978657 |
T |
|
| Q |
252 |
aataaacatccaccattaagtgcttaaattttaagtcagaagccatctataactaacaaatgtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7978658 |
aataaacatccaccattaagtgcttaaattttaagtcagaagccatctataattaacaaatgtt |
7978721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 371 - 552
Target Start/End: Original strand, 7978731 - 7978912
Alignment:
| Q |
371 |
ttaagcattaagacactaacgtgatcacatactaatatcacaattttttctagaactggcacataattcaagcgcaacttaaaactgcatttctctgcag |
470 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7978731 |
ttaagcattaagacactaacgtgatcgcatactaatatcacaattttttctagaactggcacatgattcaagcgcaacttaaaactgcatttctctgcag |
7978830 |
T |
|
| Q |
471 |
ggaaactcagaattttgcatagaaattacacccccgatcaactttaaatgtcatctggttttttattttcttcctttatttc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7978831 |
ggaaactcagaattttgcatagaaattacacccccgatcaactttaaatgtcatctggttttttattttcttcctttatttc |
7978912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 1515976 - 1515898
Alignment:
| Q |
134 |
tgattattttgtt---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctttcat |
209 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
1515976 |
tgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctttcat |
1515898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 1530206 - 1530132
Alignment:
| Q |
134 |
tgattattttgtt---gtaatgtttcatatgattaacagtacattcattcatgtattgatccaaagaatattctt |
205 |
Q |
| |
|
||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||| | ||||||| |
|
|
| T |
1530206 |
tgattattttgttaatgtattgtttcatataattaacattacattcattcatgtattgatccaaaaattattctt |
1530132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University